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    LOC1281851 transcription intermediary factor 1-alpha [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1281851, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC1281851
    Gene description
    transcription intermediary factor 1-alpha
    See related
    VectorBase:AGAMI1_003025
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP001328
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1281851 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (2994238..3035786)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin-5, mitochondrial Neighboring gene DNA polymerase zeta subunit 2 Neighboring gene furin-like protease 1 Neighboring gene uncharacterized LOC133391875 Neighboring gene cuticle protein 16.5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM33; transcription intermediary factor 1-alpha
    Names
    AGAP001328-PA
    tripartite motif-containing protein 33

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      2994238..3035786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061642649.1 → XP_061498633.1  E3 ubiquitin-protein ligase TRIM33 isoform X2

      UniProtKB/TrEMBL
      Q7PXC0

    2. XM_061642644.1 → XP_061498628.1  E3 ubiquitin-protein ligase TRIM33 isoform X1

      UniProtKB/TrEMBL
      Q7PXC0

    3. XM_061642646.1 → XP_061498630.1  E3 ubiquitin-protein ligase TRIM33 isoform X2

      UniProtKB/TrEMBL
      Q7PXC0

    4. XM_061642650.1 → XP_061498634.1  transcription intermediary factor 1-alpha isoform X3

      UniProtKB/TrEMBL
      Q7PXC0

    5. XM_061642653.1 → XP_061498637.1  transcription intermediary factor 1-alpha isoform X4

      UniProtKB/TrEMBL
      Q7PXC0

    6. XM_061642652.1 → XP_061498636.1  transcription intermediary factor 1-alpha isoform X3

      UniProtKB/TrEMBL
      Q7PXC0

    7. XM_061642638.1 → XP_061498622.1  E3 ubiquitin-protein ligase TRIM33 isoform X1

      UniProtKB/TrEMBL
      Q7PXC0

    8. XM_061642648.1 → XP_061498632.1  E3 ubiquitin-protein ligase TRIM33 isoform X2

      UniProtKB/TrEMBL
      Q7PXC0

    9. XM_061642640.1 → XP_061498624.1  E3 ubiquitin-protein ligase TRIM33 isoform X1

      UniProtKB/TrEMBL
      Q7PXC0

    10. XM_061642647.1 → XP_061498631.1  E3 ubiquitin-protein ligase TRIM33 isoform X2

      UniProtKB/TrEMBL
      Q7PXC0

    11. XM_061642651.1 → XP_061498635.1  transcription intermediary factor 1-alpha isoform X3

      UniProtKB/TrEMBL
      Q7PXC0

    12. XM_061642654.1 → XP_061498638.1  transcription intermediary factor 1-alpha isoform X4

      UniProtKB/TrEMBL
      Q7PXC0

    13. XM_061642641.1 → XP_061498625.1  E3 ubiquitin-protein ligase TRIM33 isoform X1

      UniProtKB/TrEMBL
      Q7PXC0

    14. XM_061642656.1 → XP_061498640.1  transcription intermediary factor 1-alpha isoform X4

      UniProtKB/TrEMBL
      Q7PXC0

    15. XM_061642657.1 → XP_061498641.1  transcription intermediary factor 1-alpha isoform X4

      UniProtKB/TrEMBL
      Q7PXC0

    16. XM_061642655.1 → XP_061498639.1  transcription intermediary factor 1-alpha isoform X4

      UniProtKB/TrEMBL
      Q7PXC0

    17. XM_061642642.1 → XP_061498626.1  E3 ubiquitin-protein ligase TRIM33 isoform X1

      UniProtKB/TrEMBL
      Q7PXC0

    18. XM_061642643.1 → XP_061498627.1  E3 ubiquitin-protein ligase TRIM33 isoform X1

      UniProtKB/TrEMBL
      Q7PXC0
    Nucleotide Protein Strain
    Heading Accession and Version

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