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    LOC1279297 endocuticle structural glycoprotein SgAbd-1 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1279297, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC1279297
    Gene description
    endocuticle structural glycoprotein SgAbd-1
    See related
    VectorBase:AGAMI1_002902
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    CPR80; AGAP009878
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    Genomic context

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    See LOC1279297 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 3 NC_064602.1 (44260495..44263651, complement)

    Chromosome 3 - NC_064602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC1279293 Neighboring gene pupal cuticle protein 36 Neighboring gene cuticle protein CP14.6 Neighboring gene cell division cycle protein 23 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064602.1 Chromosome 3 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of chitin-based larval cuticle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chitin-based extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endocuticle structural glycoprotein SgAbd-1
    Names
    AGAP009878-PA
    cuticular protein RR-1 family 80

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064602.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      44260495..44263651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061659674.1 → XP_061515658.1  endocuticle structural glycoprotein SgAbd-1 isoform X2

      UniProtKB/TrEMBL
      A0A1S4H2A8, Q5TXI8

    2. XM_318998.4 → XP_318998.3  endocuticle structural glycoprotein SgAbd-1 isoform X1

      See identical proteins and their annotated locations for XP_318998.3

      UniProtKB/TrEMBL
      Q5TP99, Q5TXI8
      Conserved Domains (1) summary
      pfam00379
      Location:133 → 189
      Chitin_bind_4; Insect cuticle protein

    3. XM_061659673.1 → XP_061515657.1  endocuticle structural glycoprotein SgAbd-1 isoform X1

      UniProtKB/TrEMBL
      Q5TP99, Q5TXI8
    Nucleotide Protein Strain
    Heading Accession and Version

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