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    shaker potassium voltage-gated channel protein Shaker [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1272004, updated on 3-Dec-2024

    Summary

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    Gene symbol
    shaker
    Gene description
    potassium voltage-gated channel protein Shaker
    See related
    VectorBase:AGAMI1_004386
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP000254
    Orthologs
    fruit fly all
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    Genomic context

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    See shaker in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) X NC_064600.1 (4680805..4857956)

    Chromosome X - NC_064600.1Genomic Context describing neighboring genes Neighboring gene late secretory pathway protein AVL9 homolog Neighboring gene uncharacterized LOC1272008 Neighboring gene solute carrier family 25 member 35 Neighboring gene uncharacterized LOC11175495 Neighboring gene discs large 1 Neighboring gene uncharacterized LOC11175616

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064600.1 Chromosome X Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables delayed rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of voltage-gated potassium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium voltage-gated channel protein Shaker
    Names
    AGAP000254-PA
    AGAP000254-PB
    potassium voltage-gated channel Shaker-related subfamily A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064600.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      4680805..4857956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003436902.2 → XP_003436950.2  potassium voltage-gated channel protein Shaker isoform X2

      UniProtKB/TrEMBL
      F5HJN5

    2. XM_061645770.1 → XP_061501754.1  potassium voltage-gated channel protein Shaker isoform X5

      UniProtKB/TrEMBL
      Q7QF14

    3. XM_061645739.1 → XP_061501723.1  potassium voltage-gated channel protein Shaker isoform X1

      UniProtKB/TrEMBL
      Q7QF14

    4. XM_061645756.1 → XP_061501740.1  potassium voltage-gated channel protein Shaker isoform X3

      UniProtKB/TrEMBL
      Q7QF14

    5. XM_310869.6 → XP_310869.6  potassium voltage-gated channel protein Shaker isoform X1

      UniProtKB/TrEMBL
      Q7QF14

    6. XM_061645792.1 → XP_061501776.1  potassium voltage-gated channel protein Shaker isoform X8

      UniProtKB/TrEMBL
      Q7QF14

    7. XM_061645789.1 → XP_061501773.1  potassium voltage-gated channel protein Shaker isoform X7

      UniProtKB/TrEMBL
      Q7QF14

    8. XM_061645780.1 → XP_061501764.1  potassium voltage-gated channel protein Shaker isoform X7

      UniProtKB/TrEMBL
      Q7QF14

    9. XM_061645760.1 → XP_061501744.1  potassium voltage-gated channel protein Shaker isoform X4

      UniProtKB/TrEMBL
      Q7QF14

    10. XM_061645773.1 → XP_061501757.1  potassium voltage-gated channel protein Shaker isoform X6

      UniProtKB/TrEMBL
      Q7QF14

    11. XM_061645795.1 → XP_061501779.1  potassium voltage-gated channel protein Shaker isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

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