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    LOC1274655 pre-mRNA-splicing factor RBM22 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1274655, updated on 22-Jun-2024

    Summary

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    Gene symbol
    LOC1274655
    Gene description
    pre-mRNA-splicing factor RBM22
    See related
    VectorBase:AGAMI1_005038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP004509
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1274655 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (55425761..55427499)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene clathrin interactor lqfR Neighboring gene Partner of Bursicon Neighboring gene dedicator of cytokinesis spg Neighboring gene transmembrane and coiled-coil domain 2 protein Dmtn Neighboring gene innexin inx3 Neighboring gene ubiquinone biosynthesis protein COQ2, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 1 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor RBM22
    Names
    AGAP004509-PA
    AGAP004509-PB
    pre-mRNA-splicing factor RBM22/SLT11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      55425761..55427499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_313808.5 → XP_313808.4  pre-mRNA-splicing factor RBM22

      See identical proteins and their annotated locations for XP_313808.4

      UniProtKB/TrEMBL
      F5HLH0, Q7Q9Z7
      Conserved Domains (3) summary
      smart00356
      Location:160 → 186
      ZnF_C3H1; zinc finger
      COG0724
      Location:185 → 363
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12224
      Location:232 → 305
      RRM_RBM22; RNA recognition motif (RRM) found in Pre-mRNA-splicing factor RBM22 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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