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    TpnT Troponin T, skeletal muscle [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1273614, updated on 3-Dec-2024

    Summary

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    Gene symbol
    TpnT
    Gene description
    Troponin T, skeletal muscle
    See related
    VectorBase:AGAMI1_000963
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP002350
    Orthologs
    fruit fly all
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    Genomic context

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    See TpnT in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (20253217..20265300)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene piggyBac transposable element-derived protein 4 Neighboring gene exosome complex component Rrp45 Neighboring gene nuclear pore complex protein Nup98-96 Neighboring gene cellular tumor antigen p53

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sarcomere organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of troponin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    troponin T, skeletal muscle
    Names
    AGAP002350-PA
    AGAP002350-PB
    AGAP002350-PC
    AGAP002350-PD
    AGAP002350-PE
    troponin T, fast skeletal muscle

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      20253217..20265300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061650793.1 → XP_061506777.1  troponin T, skeletal muscle isoform X2

      UniProtKB/TrEMBL
      A0A1S4GFA2, Q3B723

    2. XM_061650795.1 → XP_061506779.1  troponin T, skeletal muscle isoform X4

      UniProtKB/TrEMBL
      A0A1S4GFA8, Q3B723

    3. XM_061650794.1 → XP_061506778.1  troponin T, skeletal muscle isoform X3

      UniProtKB/TrEMBL
      Q3B721, Q3B723

    4. XM_061650796.1 → XP_061506780.1  troponin T, skeletal muscle isoform X5

      UniProtKB/TrEMBL
      Q3B722

    5. XM_001688343.3 → XP_001688395.1  troponin T, skeletal muscle isoform X7

      See identical proteins and their annotated locations for XP_001688395.1

      UniProtKB/TrEMBL
      A7USW0, Q3B720, Q3B722
      Conserved Domains (2) summary
      PRK00409
      Location:16 → 118
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam00992
      Location:130 → 208
      Troponin

    6. XM_061650797.1 → XP_061506781.1  troponin T, skeletal muscle isoform X8

      UniProtKB/TrEMBL
      Q3B722

    7. XM_312613.6 → XP_312613.5  troponin T, skeletal muscle isoform X6

      See identical proteins and their annotated locations for XP_312613.5

      UniProtKB/TrEMBL
      Q3B719, Q3B722, Q7PGE9
      Conserved Domains (2) summary
      PRK00409
      Location:16 → 118
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam00992
      Location:130 → 208
      Troponin

    8. XM_061650792.1 → XP_061506776.1  troponin T, skeletal muscle isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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