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    Scfd2 sec1 family domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498353, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Scfd2provided by RGD
    Official Full Name
    sec1 family domain containing 2provided by RGD
    Primary source
    RGD:1562708
    See related
    EnsemblRapid:ENSRNOG00000026828 AllianceGenome:RGD:1562708
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Orthologous to human SCFD2 (sec1 family domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 105.4), Liver (RPKM 86.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Scfd2 in Genome Data Viewer
    Location:
    14p11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (34037392..34369423)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (33683348..34008232)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (36216002..36543661)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481839 Neighboring gene ligand of numb-protein X 1 Neighboring gene factor interacting with PAPOLA and CPSF1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134481840 Neighboring gene uncharacterized LOC102554412 Neighboring gene RAS-like family 11 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sec1 family domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017499.1 → NP_001017499.1  sec1 family domain-containing protein 2

      Status: PROVISIONAL

      Source sequence(s)
      BC085889
      UniProtKB/TrEMBL
      A0A8I6A025, Q5U2R9
      Related
      ENSRNOP00000101405.1, ENSRNOT00000157348.1
      Conserved Domains (1) summary
      cl15415
      Location:625 → 665
      Sec1; Sec1 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      34037392..34369423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010057401.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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