U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Prokr2 prokineticin receptor 2 [ Mus musculus (house mouse) ]

    Gene ID: 246313, updated on 27-Nov-2024

    Summary

    Official Symbol
    Prokr2provided by MGI
    Official Full Name
    prokineticin receptor 2provided by MGI
    Primary source
    MGI:MGI:2181363
    See related
    Ensembl:ENSMUSG00000050558 AllianceGenome:MGI:2181363
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PKR2; Gpr73l1; Gpcr73l1; EG-VEGRF2; B830005M06Rik
    Summary
    Predicted to enable G protein-coupled receptor activity. Acts upstream of or within circadian rhythm. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; hemolymphoid system gland; nose; pharynx; and reproductive system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 3 with or without anosmia. Orthologous to human PROKR2 (prokineticin receptor 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 1.4), CNS E18 (RPKM 1.3) and 7 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Prokr2 in Genome Data Viewer
    Location:
    2 F2; 2 64.15 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (132211625..132227413, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (132369705..132385502, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132079079-132079188 Neighboring gene STARR-positive B cell enhancer ABC_E331 Neighboring gene expressed sequence AV099323 Neighboring gene predicted gene, 46766 Neighboring gene STARR-seq mESC enhancer starr_05740 Neighboring gene CDP-diacylglycerol synthase 2 Neighboring gene STARR-positive B cell enhancer ABC_E5987 Neighboring gene STARR-seq mESC enhancer starr_05741 Neighboring gene STARR-seq mESC enhancer starr_05742 Neighboring gene RIKEN cDNA 4921508D12 gene Neighboring gene VISTA enhancer mm1391 Neighboring gene predicted gene 14095

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables G protein-coupled receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables neuropeptide Y receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in cellular response to hormone stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in circadian rhythm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within circadian rhythm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in neuropeptide signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    prokineticin receptor 2
    Names
    G protein-coupled receptor 73-like 1
    PK-R2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144944.3NP_659193.3  prokineticin receptor 2

      See identical proteins and their annotated locations for NP_659193.3

      Status: VALIDATED

      Source sequence(s)
      AL807793, BB844646, BC043116
      Consensus CDS
      CCDS16773.1
      UniProtKB/Swiss-Prot
      A2AMQ8, Q80XQ0, Q8BIR4, Q8K458
      UniProtKB/TrEMBL
      Q6GTF8
      Related
      ENSMUSP00000056659.8, ENSMUST00000049997.14
      Conserved Domains (1) summary
      cd15204
      Location:51341
      7tmA_prokineticin-R; prokineticin receptors, member of the class A family of seven-transmembrane G protein-coupled receptors

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      132211625..132227413 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239558.4XP_011237860.1  prokineticin receptor 2 isoform X3

      UniProtKB/TrEMBL
      E0CY28
      Related
      ENSMUSP00000124526.2, ENSMUST00000142766.2
      Conserved Domains (2) summary
      cd14964
      Location:526
      7tm_GPCRs; TM helix 4 [structural motif]
      cl28897
      Location:1180
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    2. XM_011239555.3XP_011237857.1  prokineticin receptor 2 isoform X1

      See identical proteins and their annotated locations for XP_011237857.1

      UniProtKB/Swiss-Prot
      A2AMQ8, Q80XQ0, Q8BIR4, Q8K458
      UniProtKB/TrEMBL
      Q6GTF8
      Related
      ENSMUSP00000105784.2, ENSMUST00000110156.2
      Conserved Domains (1) summary
      cd15204
      Location:51341
      7tmA_prokineticin-R; prokineticin receptors, member of the class A family of seven-transmembrane G protein-coupled receptors
    3. XM_011239557.3XP_011237859.1  prokineticin receptor 2 isoform X2

      Conserved Domains (2) summary
      cd14964
      Location:6687
      7tm_GPCRs; TM helix 4 [structural motif]
      cl28897
      Location:50241
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily