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    lncRNA:CR42646 long non-coding RNA:CR42646 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178834, updated on 4-Jan-2025

    Summary

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    Official Symbol
    lncRNA:CR42646provided by FlyBase
    Official Full Name
    long non-coding RNA:CR42646provided by FlyBase
    Primary source
    FLYBASE:FBgn0261429
    Locus tag
    Dmel_CR42646
    See related
    AllianceGenome:FB:FBgn0261429
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR41445; CR42646; Dmel\CR42646
    Summary
    Is expressed in organism. [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See lncRNA:CR42646 in Genome Data Viewer
    Location:
    41E5-41E6; 2-55 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (5363253..5367357)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (1250758..1254862)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Cytochrome c oxidase subunit 4-like Neighboring gene uncharacterized protein Neighboring gene straw Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
    2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    3. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    mobile_element

    • Loc: 5367081-5367310 mobile_element_type = transposon:INE-1{}3208

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      5363253..5367357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_037737.2 RNA Sequence

      Status: REVIEWED

    2. NR_073830.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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