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    Azgp1 alpha-2-glycoprotein 1, zinc [ Mus musculus (house mouse) ]

    Gene ID: 12007, updated on 27-Dec-2024

    Summary

    Official Symbol
    Azgp1provided by MGI
    Official Full Name
    alpha-2-glycoprotein 1, zincprovided by MGI
    Primary source
    MGI:MGI:103163
    See related
    Ensembl:ENSMUSG00000037053 AllianceGenome:MGI:103163
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zag
    Summary
    Predicted to be involved in several processes, including antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent; detection of chemical stimulus involved in sensory perception of bitter taste; and positive regulation of T cell mediated cytotoxicity. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in several structures, including brain; exocrine gland; genitourinary system; gut; and liver and biliary system. Human ortholog(s) of this gene implicated in prostate carcinoma. Orthologous to human AZGP1 (alpha-2-glycoprotein 1, zinc-binding). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in liver adult (RPKM 435.9) and liver E18 (RPKM 299.4) See more
    Orthologs
    NEW
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    Genomic context

    See Azgp1 in Genome Data Viewer
    Location:
    5 G2; 5 76.92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137979783..137988495)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137981521..137990233)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_14660 Neighboring gene ZW10 interactor pseudogene Neighboring gene STARR-seq mESC enhancer starr_14661 Neighboring gene gap junction protein, gamma 3 Neighboring gene predicted gene 4963 Neighboring gene STARR-seq mESC enhancer starr_14662 Neighboring gene STARR-seq mESC enhancer starr_14663 Neighboring gene sperm motility kinase 3A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (3)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc-alpha-2-glycoprotein
    Names
    major histocompatibility complex class I-like protein
    zn-alpha-2-GP

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013478.2NP_038506.2  zinc-alpha-2-glycoprotein precursor

      See identical proteins and their annotated locations for NP_038506.2

      Status: VALIDATED

      Source sequence(s)
      AK005051, BY101787, BY705112, D18019
      Consensus CDS
      CCDS19783.1
      UniProtKB/Swiss-Prot
      Q64726, Q9DBB7
      Related
      ENSMUSP00000038559.6, ENSMUST00000035390.7
      Conserved Domains (2) summary
      cl08246
      Location:21196
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
      cl11960
      Location:200291
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      137979783..137988495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)