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    AFF2 AF4/FMR2 family member 2 [ Gallus gallus (chicken) ]

    Gene ID: 422394, updated on 3-Dec-2024

    Summary

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    Symbol
    AFF2provided by CGNC
    Full Name
    AF4/FMR2 family member 2provided by CGNC
    Primary source
    CGNC:51728
    See related
    Ensembl:ENSGALG00010013206
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See AFF2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (18133256..18468953, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (18172137..18480210, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene microRNA 7469 Neighboring gene iduronate 2-sulfatase Neighboring gene uncharacterized LOC422393 Neighboring gene uncharacterized LOC107053198 Neighboring gene FMR1 neighbor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G-quadruplex RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AF4/FMR2 family member 2; LOW QUALITY PROTEIN: AF4/FMR2 family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      18133256..18468953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046941145.1 → XP_046797101.1  AF4/FMR2 family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YCN8
      Related
      ENSGALP00010018566.1, ENSGALT00010031718.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      18172137..18480210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670643.1 → XP_040526577.1  LOW QUALITY PROTEIN: AF4/FMR2 family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YCN8
      Conserved Domains (1) summary
      PTZ00449
      Location:673 → 1012
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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