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    FAM192A family with sequence similarity 192 member A [ Gallus gallus (chicken) ]

    Gene ID: 415647, updated on 17-Aug-2024

    Summary

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    Symbol
    FAM192Aprovided by CGNC
    Full Name
    family with sequence similarity 192 member Aprovided by CGNC
    Primary source
    CGNC:50035
    See related
    Ensembl:ENSGALG00010022165
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    NIP30
    Orthologs
    human mouse all
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    Genomic context

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    See FAM192A in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (689641..699787, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (820189..830335, complement)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene cholesteryl ester transfer protein Neighboring gene NLR family CARD domain containing 5 Neighboring gene copine 2 Neighboring gene uncharacterized LOC107054262 Neighboring gene glycine-rich RNA-binding protein 10-like Neighboring gene ring finger and SPRY domain containing 1 Neighboring gene ADP ribosylation factor like GTPase 2 binding protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PSME3-interacting protein
    Names
    NEFA-interacting nuclear protein NIP30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277541.2 → NP_001264470.1  PSME3-interacting protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000247
      UniProtKB/TrEMBL
      A0A8V0ZP56
      Related
      ENSGALP00010032466.1, ENSGALT00010053914.1
      Conserved Domains (2) summary
      PTZ00108
      Location:56 → 181
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam10187
      Location:16 → 117
      Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      689641..699787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      820189..830335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials