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    LHX9 LIM homeobox 9 [ Gallus gallus (chicken) ]

    Gene ID: 396397, updated on 3-Dec-2024

    Summary

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    Symbol
    LHX9provided by CGNC
    Full Name
    LIM homeobox 9provided by CGNC
    Primary source
    CGNC:1590
    See related
    Ensembl:ENSGALG00010010220
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    LH-2
    Orthologs
    human mouse all
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    Genomic context

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    See LHX9 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (2281976..2301572, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (2295396..2315114, complement)

    Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene NIMA related kinase 7 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC124418407 Neighboring gene heat shock transcription factor Y1 Neighboring gene chromosome 1 open reading frame 53 Neighboring gene DENN domain containing 1B Neighboring gene uncharacterized LOC121111353

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the LIM-homeobox genes, Lhx1 and Lhx9, in the diencephalon during chick development. Sun X, et al. Int J Dev Biol, 2008. PMID 18033670
    2. Transcriptional control of axonal guidance and sorting in dorsal interneurons by the Lim-HD proteins Lhx9 and Lhx1. Avraham O, et al. Neural Dev, 2009 Jun 19. PMID 19545367, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Expression dynamics of LHX9 in the diencephalon during chick development is reported.
      Title: Expression dynamics of the LIM-homeobox genes, Lhx1 and Lhx9, in the diencephalon during chick development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx9
    Names
    LIM homeobox protein 9
    homeobox protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205426.2 → NP_990757.2  LIM/homeobox protein Lhx9

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000237
      UniProtKB/Swiss-Prot
      Q90881
      Related
      ENSGALP00010013829.1, ENSGALT00010024320.1
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 324
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2281976..2301572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025152769.3 → XP_025008537.1  LIM/homeobox protein Lhx9 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y630, A0A8V0YD12
      Conserved Domains (3) summary
      cd09377
      Location:110 → 168
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:42 → 105
      LIM1_Lhx2; The first LIM domain of Lhx2
      smart00389
      Location:248 → 293
      HOX; Homeodomain

    2. XM_046944320.1 → XP_046800276.1  LIM/homeobox protein Lhx9 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y4G0, A0A8V0Y630
      Related
      ENSGALP00010013839.1, ENSGALT00010024337.1

    3. XM_046944318.1 → XP_046800274.1  LIM/homeobox protein Lhx9 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y630

    4. XM_046944322.1 → XP_046800278.1  LIM/homeobox protein Lhx9 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Y630

    5. XM_046944321.1 → XP_046800277.1  LIM/homeobox protein Lhx9 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y630
      Related
      ENSGALP00010013841.1, ENSGALT00010024340.1

    6. XM_015290253.4 → XP_015145739.1  LIM/homeobox protein Lhx9 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y630
      Related
      ENSGALP00010013837.1, ENSGALT00010024333.1
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      smart00389
      Location:267 → 312
      HOX; Homeodomain

    7. XM_015290251.4 → XP_015145737.1  LIM/homeobox protein Lhx9 isoform X4

      UniProtKB/Swiss-Prot
      Q90881
      UniProtKB/TrEMBL
      A0A8V0Y4F1
      Conserved Domains (3) summary
      cd09377
      Location:110 → 168
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:42 → 105
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:252 → 305
      Homeobox; Homeobox domain

    8. XM_015290250.4 → XP_015145736.1  LIM/homeobox protein Lhx9 isoform X1

      UniProtKB/Swiss-Prot
      Q90881
      Related
      ENSGALP00010013834.1, ENSGALT00010024327.1
      Conserved Domains (3) summary
      cd09377
      Location:128 → 186
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:270 → 322
      Homeobox; Homeobox domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2295396..2315114 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046922427.1 → XP_046778383.1  LIM/homeobox protein Lhx9 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y4G0, A0A8V0Y630

    2. XM_046922426.1 → XP_046778382.1  LIM/homeobox protein Lhx9 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y630

    3. XM_046922432.1 → XP_046778388.1  LIM/homeobox protein Lhx9 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Y630

    4. XM_046922429.1 → XP_046778385.1  LIM/homeobox protein Lhx9 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y630, A0A8V0YD12

    5. XM_046922431.1 → XP_046778387.1  LIM/homeobox protein Lhx9 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y630

    6. XM_046922430.1 → XP_046778386.1  LIM/homeobox protein Lhx9 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y630

    7. XM_046922428.1 → XP_046778384.1  LIM/homeobox protein Lhx9 isoform X4

      UniProtKB/Swiss-Prot
      Q90881
      UniProtKB/TrEMBL
      A0A8V0Y4F1

    8. XM_046922425.1 → XP_046778381.1  LIM/homeobox protein Lhx9 isoform X1

      UniProtKB/Swiss-Prot
      Q90881
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q90881.2 GenPept UniProtKB/Swiss-Prot:Q90881

    Gene LinkOut

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