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    C6orf106 C6orf106 homolog [ Gallus gallus (chicken) ]

    Gene ID: 419902, updated on 17-Aug-2024

    Summary

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    Official Symbol
    C6orf106provided by CGNC
    Official Full Name
    C6orf106 homologprovided by CGNC
    Primary source
    CGNC:2004
    See related
    Ensembl:ENSGALG00010026094
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ILRUN; C26H6orf106
    Orthologs
    human mouse all
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    Genomic context

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    See C6orf106 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (4352529..4384393)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (4320325..4352155)

    Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene UHRF1 binding protein 1 Neighboring gene small nuclear ribonucleoprotein polypeptide C Neighboring gene SAM pointed domain containing ETS transcription factor Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene ribosomal protein S10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ILRUN
    Names
    chromosome 26 C6orf106 homolog
    uncharacterized protein C6orf106 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030919.2 → NP_001026090.1  protein ILRUN

      See identical proteins and their annotated locations for NP_001026090.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000356
      UniProtKB/Swiss-Prot
      Q5F3N9
      Related
      ENSGALP00010039251.1, ENSGALT00010063592.1
      Conserved Domains (2) summary
      cd14349
      Location:23 → 64
      UBA_CF106; UBA-like domain found in uncharacterized protein C6orf106 and similar proteins
      cd14947
      Location:71 → 180
      NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4352529..4384393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015298936.3 → XP_015154422.2  protein ILRUN isoform X1

      Conserved Domains (1) summary
      cd14947
      Location:42 → 151
      NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4320325..4352155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932957.1 → XP_046788913.1  protein ILRUN isoform X1

    2. XM_046932958.1 → XP_046788914.1  protein ILRUN isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5F3N9.1 GenPept UniProtKB/Swiss-Prot:Q5F3N9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.