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    SEC24B SEC24 homolog B, COPII coat complex component [ Gallus gallus (chicken) ]

    Gene ID: 422523, updated on 3-Dec-2024

    Summary

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    Symbol
    SEC24Bprovided by CGNC
    Full Name
    SEC24 homolog B, COPII coat complex componentprovided by CGNC
    Primary source
    CGNC:51764
    See related
    Ensembl:ENSGALG00010005692
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SEC24B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (36843593..36885756, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (36795549..36837706, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Neighboring gene hematopoietic prostaglandin D synthase Neighboring gene photopigment melanopsin-like Neighboring gene collagen type XXV alpha 1 chain Neighboring gene ethanolamine-phosphate phospho-lyase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein Sec24B
    Names
    SEC24 family member B
    SEC24 related gene family, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031135.2 → NP_001026306.2  protein transport protein Sec24B

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000073
      UniProtKB/TrEMBL
      A0A8V0XMY7, Q5ZM67
      Related
      ENSGALP00010008062.1, ENSGALT00010013594.1
      Conserved Domains (2) summary
      COG5028
      Location:408 → 1232
      COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
      pfam05109
      Location:1 → 335
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      36843593..36885756 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046940079.1 → XP_046796035.1  protein transport protein Sec24B isoform X1

      UniProtKB/TrEMBL
      Q5ZM67
      Related
      ENSGALP00010008054.1, ENSGALT00010013585.1

    2. XM_046940080.1 → XP_046796036.1  protein transport protein Sec24B isoform X2

      UniProtKB/TrEMBL
      Q5ZM67

    3. XM_046940081.1 → XP_046796037.1  protein transport protein Sec24B isoform X3

      UniProtKB/TrEMBL
      Q5ZM67

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      36795549..36837706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046915965.1 → XP_046771921.1  protein transport protein Sec24B isoform X1

      UniProtKB/TrEMBL
      Q5ZM67

    2. XM_046915966.1 → XP_046771922.1  protein transport protein Sec24B isoform X2

      UniProtKB/TrEMBL
      Q5ZM67

    3. XM_046915967.1 → XP_046771923.1  protein transport protein Sec24B isoform X3

      UniProtKB/TrEMBL
      Q5ZM67
    Nucleotide Protein Strain
    Heading Accession and Version

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