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    FAM60A family with sequence similarity 60 member A [ Gallus gallus (chicken) ]

    Gene ID: 418140, updated on 3-Dec-2024

    Summary

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    Symbol
    FAM60Aprovided by CGNC
    Full Name
    family with sequence similarity 60 member Aprovided by CGNC
    Primary source
    CGNC:9801
    See related
    Ensembl:ENSGALG00010012054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SINHCAF
    Orthologs
    human mouse all
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    Genomic context

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    See FAM60A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (59597553..59613845)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (59926156..59942118)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109213 Neighboring gene DENN domain containing 5B Neighboring gene uncharacterized LOC121109214 Neighboring gene uncharacterized LOC101752247 Neighboring gene microRNA 1593 Neighboring gene caprin family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FAM60A promotes osteosarcoma development and progression. Sun Y, et al. Cancer Med, 2023 Aug. PMID 37439040, Free PMC Article
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FAM60A promotes osteosarcoma development and progression.
      Title: FAM60A promotes osteosarcoma development and progression.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SIN3-HDAC complex-associated factor
    Names
    SIN3-HDAC complex associated factor
    protein FAM60A
    tera protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030766.2 → NP_001025937.2  SIN3-HDAC complex-associated factor

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000012
      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 198
      FAM60A; Protein Family FAM60A

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      59597553..59613845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046939197.1 → XP_046795153.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Related
      ENSGALP00010016631.1, ENSGALT00010028872.1

    2. XM_040697067.2 → XP_040553001.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 198
      FAM60A; Protein Family FAM60A

    3. XM_040697049.2 → XP_040552983.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    4. XM_040697053.2 → XP_040552987.1  SIN3-HDAC complex-associated factor isoform X2

      UniProtKB/Swiss-Prot
      Q5ZJV7

    5. XM_040697076.2 → XP_040553010.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 198
      FAM60A; Protein Family FAM60A

    6. XM_046939181.1 → XP_046795137.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0
      Related
      ENSGALP00010016629.1, ENSGALT00010028870.1

    7. XM_046939186.1 → XP_046795142.1  SIN3-HDAC complex-associated factor isoform X2

      UniProtKB/Swiss-Prot
      Q5ZJV7

    8. XM_040697063.2 → XP_040552997.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 198
      FAM60A; Protein Family FAM60A

    9. XM_015285722.4 → XP_015141208.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 198
      FAM60A; Protein Family FAM60A

    10. XM_040697045.2 → XP_040552979.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    11. XM_046939182.1 → XP_046795138.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    12. XM_046939199.1 → XP_046795155.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    13. XM_040697052.2 → XP_040552986.1  SIN3-HDAC complex-associated factor isoform X2

      UniProtKB/Swiss-Prot
      Q5ZJV7

    14. XM_015285715.4 → XP_015141201.1  SIN3-HDAC complex-associated factor isoform X3

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YKP3
      Related
      ENSGALP00010016627.1, ENSGALT00010028868.1
      Conserved Domains (1) summary
      pfam15396
      Location:15 → 211
      FAM60A; Protein Family FAM60A

    15. XM_025148812.3 → XP_025004580.1  SIN3-HDAC complex-associated factor isoform X4

      UniProtKB/Swiss-Prot
      Q5ZJV7
      Conserved Domains (1) summary
      pfam15396
      Location:14 → 210
      FAM60A; Protein Family FAM60A

    16. XM_040697079.2 → XP_040553013.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 198
      FAM60A; Protein Family FAM60A

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      59926156..59942118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907563.1 → XP_046763519.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    2. XM_046907562.1 → XP_046763518.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    3. XM_046907549.1 → XP_046763505.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    4. XM_046907554.1 → XP_046763510.1  SIN3-HDAC complex-associated factor isoform X2

      UniProtKB/Swiss-Prot
      Q5ZJV7

    5. XM_046907561.1 → XP_046763517.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    6. XM_046907551.1 → XP_046763507.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    7. XM_046907556.1 → XP_046763512.1  SIN3-HDAC complex-associated factor isoform X2

      UniProtKB/Swiss-Prot
      Q5ZJV7

    8. XM_046907560.1 → XP_046763516.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    9. XM_046907559.1 → XP_046763515.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    10. XM_046907550.1 → XP_046763506.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    11. XM_046907552.1 → XP_046763508.1  SIN3-HDAC complex-associated factor isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YFX0

    12. XM_046907564.1 → XP_046763520.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8

    13. XM_046907553.1 → XP_046763509.1  SIN3-HDAC complex-associated factor isoform X2

      UniProtKB/Swiss-Prot
      Q5ZJV7

    14. XM_046907557.1 → XP_046763513.1  SIN3-HDAC complex-associated factor isoform X3

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      A0A8V0YKP3

    15. XM_046907558.1 → XP_046763514.1  SIN3-HDAC complex-associated factor isoform X4

      UniProtKB/Swiss-Prot
      Q5ZJV7

    16. XM_046907565.1 → XP_046763521.1  SIN3-HDAC complex-associated factor isoform X5

      UniProtKB/Swiss-Prot
      Q5ZJV7
      UniProtKB/TrEMBL
      R4GJL8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZJV7.1 GenPept UniProtKB/Swiss-Prot:Q5ZJV7

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