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    VAPB VAMP associated protein B and C [ Gallus gallus (chicken) ]

    Gene ID: 419317, updated on 17-Aug-2024

    Summary

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    Symbol
    VAPBprovided by CGNC
    Full Name
    VAMP associated protein B and Cprovided by CGNC
    Primary source
    CGNC:50970
    See related
    Ensembl:ENSGALG00010014831
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VAPB in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (11517244..11550853, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (11304457..11338128, complement)

    Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107350 Neighboring gene APC down-regulated 1 like Neighboring gene uncharacterized LOC112530116 Neighboring gene RAB22A, member RAS oncogene family Neighboring gene protein phosphatase 4 regulatory subunit 1 like Neighboring gene ankyrin repeat domain 60

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FFAT motif binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum-plasma membrane tethering IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle-associated membrane protein-associated protein B/C
    Names
    VAMP (vesicle-associated membrane protein)-associated protein B and C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006296.2 → NP_001006296.2  vesicle-associated membrane protein-associated protein B/C

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000328
      UniProtKB/TrEMBL
      F1NSW0, Q5ZJJ3
      Related
      ENSGALP00010020711.1, ENSGALT00010035694.1
      Conserved Domains (1) summary
      cl27657
      Location:8 → 133
      Motile_Sperm; MSP (Major sperm protein) domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11517244..11550853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005841104.2 RNA Sequence

    2. XR_001469562.4 RNA Sequence

    3. XR_005841103.2 RNA Sequence

    4. XR_001469561.4 RNA Sequence

    5. XR_005841102.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      11304457..11338128 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_006936731.1 RNA Sequence

    2. XR_006936728.1 RNA Sequence

    3. XR_006936727.1 RNA Sequence

    4. XR_006936729.1 RNA Sequence

    5. XR_006936730.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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