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    UBLCP1 ubiquitin like domain containing CTD phosphatase 1 [ Gallus gallus (chicken) ]

    Gene ID: 416237, updated on 17-Aug-2024

    Summary

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    Symbol
    UBLCP1provided by CGNC
    Full Name
    ubiquitin like domain containing CTD phosphatase 1provided by CGNC
    Primary source
    CGNC:2684
    See related
    Ensembl:ENSGALG00010014900
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See UBLCP1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (10216599..10229403, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (10218832..10231653, complement)

    Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene ovoinhibitor-like Neighboring gene serine protease inhibitor Kazal-type 6-like Neighboring gene ring finger protein 145 Neighboring gene EBF transcription factor 1 Neighboring gene uncharacterized LOC101749832

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like domain-containing CTD phosphatase 1
    Names
    nuclear proteasome inhibitor UBLCP1
    NP_001025784.2
    XP_015149251.1
    XP_025010611.1
    XP_025010612.1
    XP_040502829.1
    XP_046756304.1
    XP_046782904.1
    XP_046782905.1
    XP_046782906.1
    XP_046782907.1
    XP_046782908.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030613.4 → NP_001025784.2  ubiquitin-like domain-containing CTD phosphatase 1

      See identical proteins and their annotated locations for NP_001025784.2

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000256
      UniProtKB/Swiss-Prot
      Q5ZJJ8
      Conserved Domains (2) summary
      TIGR02245
      Location:117 → 311
      HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
      cd01813
      Location:3 → 77
      Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10216599..10229403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293765.4 → XP_015149251.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8
      Conserved Domains (2) summary
      TIGR02245
      Location:117 → 311
      HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
      cd01813
      Location:3 → 77
      Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

    2. XM_025154843.3 → XP_025010611.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8
      Conserved Domains (2) summary
      TIGR02245
      Location:117 → 311
      HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
      cd01813
      Location:3 → 77
      Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

    3. XM_025154844.3 → XP_025010612.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8
      Related
      ENSGALP00010020802.1, ENSGALT00010035864.1
      Conserved Domains (2) summary
      TIGR02245
      Location:117 → 311
      HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
      cd01813
      Location:3 → 77
      Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

    4. XM_046900348.1 → XP_046756304.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8

    5. XM_040646895.2 → XP_040502829.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8
      Conserved Domains (2) summary
      TIGR02245
      Location:117 → 311
      HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
      cd01813
      Location:3 → 77
      Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10218832..10231653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046926948.1 → XP_046782904.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8

    2. XM_046926949.1 → XP_046782905.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8

    3. XM_046926951.1 → XP_046782907.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8

    4. XM_046926952.1 → XP_046782908.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8

    5. XM_046926950.1 → XP_046782906.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZJJ8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZJJ8.1 GenPept UniProtKB/Swiss-Prot:Q5ZJJ8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials