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    EDC4 enhancer of mRNA decapping 4 [ Gallus gallus (chicken) ]

    Gene ID: 415656, updated on 17-Aug-2024

    Summary

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    Symbol
    EDC4provided by CGNC
    Full Name
    enhancer of mRNA decapping 4provided by CGNC
    Primary source
    CGNC:1139
    See related
    Ensembl:ENSGALG00010021908
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See EDC4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (940304..971578)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (1111569..1142819)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene THAP domain containing 11 Neighboring gene nuclear transport factor 2 Neighboring gene uncharacterized LOC107052158 Neighboring gene neuritin 1 like Neighboring gene protein serine kinase H1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    enhancer of mRNA-decapping protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      940304..971578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_414022.8 → XP_414022.4  enhancer of mRNA-decapping protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A1D5P1Q3
      Related
      ENSGALP00010032114.1, ENSGALT00010053286.1
      Conserved Domains (3) summary
      COG1322
      Location:955 → 1098
      RmuC; DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair]
      sd00039
      Location:179 → 230
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:113 → 440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein

    2. XM_004944062.5 → XP_004944119.1  enhancer of mRNA-decapping protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A1D5PW21
      Related
      ENSGALP00010032111.1, ENSGALT00010053282.1
      Conserved Domains (4) summary
      COG1322
      Location:904 → 1047
      RmuC; DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair]
      sd00039
      Location:179 → 230
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:113 → 440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
      pfam15709
      Location:820 → 980
      DUF4670; Domain of unknown function (DUF4670)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1111569..1142819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040680885.2 → XP_040536819.1  enhancer of mRNA-decapping protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A1D5P1Q3
      Conserved Domains (3) summary
      COG1322
      Location:955 → 1098
      RmuC; DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair]
      sd00039
      Location:179 → 230
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:113 → 440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein

    2. XM_040680886.2 → XP_040536820.1  enhancer of mRNA-decapping protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A1D5PW21
      Conserved Domains (4) summary
      COG1322
      Location:904 → 1047
      RmuC; DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair]
      sd00039
      Location:179 → 230
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:113 → 440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
      pfam15709
      Location:820 → 980
      DUF4670; Domain of unknown function (DUF4670)
    Nucleotide Protein Strain
    Heading Accession and Version

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