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    IFT172 intraflagellar transport 172 [ Gallus gallus (chicken) ]

    Gene ID: 421983, updated on 17-Aug-2024

    Summary

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    Symbol
    IFT172provided by CGNC
    Full Name
    intraflagellar transport 172provided by CGNC
    Primary source
    CGNC:12365
    See related
    Ensembl:ENSGALG00010008936
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See IFT172 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (104183024..104216747)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (103943565..103977313)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain containing 4 Neighboring gene low density lipoprotein receptor adaptor protein 1 like Neighboring gene keratinocyte associated protein 3 Neighboring gene nuclear receptor binding protein 1 Neighboring gene uncharacterized LOC107053158

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 172 homolog
    Names
    intraflagellar transport 172 homolog
    selective LIM binding factor, rat homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      104183024..104216747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015285006.4 → XP_015140492.2  intraflagellar transport protein 172 homolog

      UniProtKB/TrEMBL
      A0A8V0Y1E4
      Related
      ENSGALP00010012136.1, ENSGALT00010021235.1
      Conserved Domains (4) summary
      cd15832
      Location:812 → 866
      SNAP; TPR repeat [structural motif]
      sd00039
      Location:19 → 64
      7WD40; WD40 repeat [structural motif]
      cl24038
      Location:812 → 997
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      cl29593
      Location:16 → 318
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      103943565..103977313
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040668238.2 → XP_040524172.1  intraflagellar transport protein 172 homolog

      UniProtKB/TrEMBL
      A0A8V0Y1E4
      Conserved Domains (4) summary
      cd15832
      Location:812 → 866
      SNAP; TPR repeat [structural motif]
      sd00039
      Location:20 → 64
      7WD40; WD40 repeat [structural motif]
      cl24038
      Location:812 → 997
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      cl29593
      Location:16 → 318
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein Strain
    Heading Accession and Version

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