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    SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [ Gallus gallus (chicken) ]

    Gene ID: 426882, updated on 17-Aug-2024

    Summary

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    Symbol
    SMARCD1provided by CGNC
    Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1provided by CGNC
    Primary source
    CGNC:4661
    See related
    Ensembl:ENSGALG00010023184
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCD1 in Genome Data Viewer
    Location:
    chromosome: 34
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (458868..465952, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (406621..413704, complement)

    Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene COX14, cytochrome c oxidase assembly factor Neighboring gene glycerol-3-phosphate dehydrogenase 1 Neighboring gene WAS/WASL-interacting protein family member 3-like Neighboring gene acid sensing ion channel subunit 1 Neighboring gene Rac GTPase activating protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. myomiR-dependent switching of BAF60 variant incorporation into Brg1 chromatin remodeling complexes during embryo myogenesis. Goljanek-Whysall K, et al. Development, 2014 Sep. PMID 25078649, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The concerted negative regulation of BAF60a and BAF60b by the muscle-specific microRNAs (myomiRs) miR-133 and miR-1/206 during somite differentiation, is reported.
      Title: myomiR-dependent switching of BAF60 variant incorporation into Brg1 chromatin remodeling complexes during embryo myogenesis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      458868..465952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_424488.8 → XP_424488.3  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

      UniProtKB/TrEMBL
      A0A1D5PSH3, A0A8V0ZUV5
      Related
      ENSGALP00010034248.1, ENSGALT00010056505.1
      Conserved Domains (1) summary
      cd17674
      Location:291 → 367
      SWIB_BAF60A; SWIB domain found in BRG1-associated factor 60A (BAF60A) and similar proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      406621..413704 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040693945.2 → XP_040549879.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

      UniProtKB/TrEMBL
      A0A1D5PSH3, A0A8V0ZUV5
      Conserved Domains (1) summary
      cd17674
      Location:291 → 367
      SWIB_BAF60A; SWIB domain found in BRG1-associated factor 60A (BAF60A) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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