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    WASHC1 WASH complex subunit 1 [ Gallus gallus (chicken) ]

    Gene ID: 418145, updated on 3-Dec-2024

    Summary

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    Official Symbol
    WASHC1provided by CGNC
    Official Full Name
    WASH complex subunit 1provided by CGNC
    Primary source
    CGNC:50683
    See related
    Ensembl:ENSGALG00010012159
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    WASH1; FAM39B; WASH2P
    Orthologs
    human mouse all
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    Genomic context

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    See WASHC1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (59992803..60032025, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (60320722..60359952, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene acrosin-binding protein like Neighboring gene DEAD/H-box helicase 11 Neighboring gene ZFP2 zinc finger protein Neighboring gene IQ motif and Sec7 domain 3 Neighboring gene sodium- and chloride-dependent GABA transporter 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WASH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in recycling endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WASH complex subunit 1
    Names
    WAS protein family homolog 1
    WAS protein family homolog 2 pseudogene
    family with sequence similarity 39, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006245.2 → NP_001006245.2  WASH complex subunit 1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000012
      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      59992803..60032025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046939212.1 → XP_046795168.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3
      Related
      ENSGALP00010016913.1, ENSGALT00010029168.1

    2. XM_046939211.1 → XP_046795167.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3

    3. XM_046939207.1 → XP_046795163.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3

    4. XM_046939202.1 → XP_046795158.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3

    5. XM_046939208.1 → XP_046795164.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3

    6. XM_025148819.3 → XP_025004587.2  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YEH3
      Related
      ENSGALP00010016920.1, ENSGALT00010029177.1

    7. XM_046939200.1 → XP_046795156.1  WASH complex subunit 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZKA6
      UniProtKB/TrEMBL
      A0A8V0YD94
      Related
      ENSGALP00010016925.1, ENSGALT00010029183.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      60320722..60359952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907572.1 → XP_046763528.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6

    2. XM_046907571.1 → XP_046763527.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6

    3. XM_046907569.1 → XP_046763525.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6

    4. XM_046907567.1 → XP_046763523.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6

    5. XM_046907570.1 → XP_046763526.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6

    6. XM_046907568.1 → XP_046763524.1  WASH complex subunit 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZKA6

    7. XM_046907566.1 → XP_046763522.1  WASH complex subunit 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZKA6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZKA6.1 GenPept UniProtKB/Swiss-Prot:Q5ZKA6

    Gene LinkOut

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