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    Prelid3b PRELI domain containing 3B [ Mus musculus (house mouse) ]

    Gene ID: 66390, updated on 9-Dec-2024

    Summary

    Official Symbol
    Prelid3bprovided by MGI
    Official Full Name
    PRELI domain containing 3Bprovided by MGI
    Primary source
    MGI:MGI:1913640
    See related
    Ensembl:ENSMUSG00000016257 AllianceGenome:MGI:1913640
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Slmo2; 2310042G06Rik
    Summary
    Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Located in mitochondrion. Orthologous to human PRELID3B (PRELI domain containing 3B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in liver E14 (RPKM 35.0), liver E14.5 (RPKM 32.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Prelid3b in Genome Data Viewer
    Location:
    2 H4; 2 97.96 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (174306884..174314734, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (174465076..174473000, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene tubulin, beta 1 class VI Neighboring gene STARR-seq mESC enhancer starr_06641 Neighboring gene ATP synthase F1 subunit epsilon Neighboring gene STARR-positive B cell enhancer ABC_E6031 Neighboring gene predicted gene, 38546 Neighboring gene predicted gene, 52540

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General protein information

    Preferred Names
    PRELI domain containing protein 3B
    Names
    likely orthologue of H. sapiens chromosome 20 open reading frame 45 (C20orf45)
    protein slowmo homolog 2
    slowmo homolog 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025531.2NP_079807.1  PRELI domain containing protein 3B

      See identical proteins and their annotated locations for NP_079807.1

      Status: PROVISIONAL

      Source sequence(s)
      BC026968
      Consensus CDS
      CCDS17155.1
      UniProtKB/Swiss-Prot
      A2ADM7, Q3UC64, Q9CRD3, Q9CYY7
      Related
      ENSMUSP00000016401.9, ENSMUST00000016401.15
      Conserved Domains (1) summary
      pfam04707
      Location:15170
      PRELI; PRELI-like family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      174306884..174314734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)