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    TEKT4P2 tektin 4 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 100132288, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TEKT4P2provided by HGNC
    Official Full Name
    tektin 4 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:40046
    See related
    Ensembl:ENSG00000291050 AllianceGenome:HGNC:40046
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MAFIPL; TEKT4P
    Expression
    Ubiquitous expression in adrenal (RPKM 6.6), thyroid (RPKM 6.0) and 25 other tissues See more
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    Genomic context

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    See TEKT4P2 in Genome Data Viewer
    Location:
    21p11.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (9068356..9129761, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (5692607..5754012, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (9907189..9968594, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9879918-9880082 Neighboring gene uncharacterized LOC101927615 Neighboring gene CDRT15 pseudogene 9 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9902786-9902980 Neighboring gene tektin-4-like Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9922701-9922962 Neighboring gene MPRA-validated peak4333 silencer Neighboring gene SOWAHC pseudogene 2 Neighboring gene sorting nexin 18 pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9988843-9989025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:9999495-9999996 Neighboring gene uncharacterized LOC101930100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10177673-10178174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10178175-10178674 Neighboring gene putative ankyrin repeat domain-containing protein 20A12 Neighboring gene NCOR1 pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. P5644 interacts with phosphatidylinositol-4-phosphate adaptor protein-1 associated protein-1. Ye XX, et al. Mol Cell Biochem, 2005 Mar. PMID 15881666
    2. The novel human gene MIP functions as a co-activator of hMafF. Ye X, et al. Arch Biochem Biophys, 2006 May 15. PMID 16549056
    3. Lineage-specific gene duplication and loss in human and great ape evolution. Fortna A, et al. PLoS Biol, 2004 Jul. PMID 15252450, Free PMC Article
    4. Identification of genes related to Parkinson's disease using expressed sequence tags. Kim JM, et al. DNA Res, 2006 Dec 31. PMID 17213182
    5. Large-scale cDNA transfection screening for genes related to cancer development and progression. Wan D, et al. Proc Natl Acad Sci U S A, 2004 Nov 2. PMID 15498874, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. it is suggested that pp5644 physically bind to FASP1
      Title: P5644 interacts with phosphatidylinositol-4-phosphate adaptor protein-1 associated protein-1.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • Tektin-4 like protein LOC389833

    Clone Names

    • FLJ00219, FLJ35473, FLJ39633, MGC90442

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038327.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AA863253, BC073934, CR392039
      Related
      ENST00000416067.7

    2. NR_038328.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' terminal exon and is shorter compared to variant 1.
      Source sequence(s)
      AA453722, AA863253, CR392039
      Related
      ENST00000690096.2

    3. NR_038329.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has an alternate 3' structure and is shorter compared to variant 1.
      Source sequence(s)
      CA414639, CR392039, DT217039
      Related
      ENST00000691834.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      9068356..9129761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      5692607..5754012 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033515.1: Suppressed sequence

      Description
      NM_001033515.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    2. NM_174948.2: Suppressed sequence

      Description
      NM_174948.2: This RefSeq was permanently suppressed because it is primarily UTR sequence.
    Nucleotide Protein
    Heading Accession and Version

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