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    rpl6 60S ribosomal protein eL6 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539372, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpl6
    Official Full Name
    60S ribosomal protein eL6
    Primary source
    PomBase:SPCC622.18
    Locus tag
    SPOM_SPCC622.18
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rpl6 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (1437123..1438010)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene Jmjc domain-containing protein Epe1 Neighboring gene ncRNA Neighboring gene AP endonuclease, minor transcript isoform Apn1 Neighboring gene siderophore-Fe(3+) transporter Str2 Neighboring gene histone demethylase Jmj4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cotranscriptional recruitment of the nuclear poly(A)-binding protein Pab2 to nascent transcripts and association with translating mRNPs. Lemieux C, et al. Nucleic Acids Res, 2009 Jun. PMID 19336419, Free PMC Article
    2. Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast. Hirano Y, et al. J Biochem, 2023 Jun 30. PMID 36799444
    3. Chromatin localization of nucleophosmin organizes ribosome biogenesis. Ugolini I, et al. Mol Cell, 2022 Dec 1. PMID 36423630, Free PMC Article
    4. Proteomic and functional analysis of the noncanonical poly(A) polymerase Cid14. Keller C, et al. RNA, 2010 Jun. PMID 20403971, Free PMC Article
    5. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosome biogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus HDA PubMed 
    is_active_in nucleus HDA PubMed 
    part_of preribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein eL6

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1437123..1438010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023180.3 → NP_588190.1  60S ribosomal protein eL6 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588190.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P79071
      Conserved Domains (2) summary
      COG2163
      Location:48 → 171
      RPL14A; Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
      cd13156
      Location:44 → 195
      KOW_RPL6; KOW motif of Ribosomal Protein L6
    Nucleotide Protein
    Heading Accession and Version

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