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    rbm8 RNA-binding protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541998, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rbm8
    Official Full Name
    RNA-binding protein
    Primary source
    PomBase:SPAC23A1.09
    Locus tag
    SPOM_SPAC23A1.09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    Y14
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    Genomic context

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    See rbm8 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (4094025..4095148)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase E3 Neighboring gene 60S ribosomal protein L34 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation elongation factor EF-1 alpha Ef1a-b Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 60S ribosomal protein uL13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The fission yeast MTREC and EJC orthologs ensure the maturation of meiotic transcripts during meiosis. Marayati BF, et al. RNA, 2016 Sep. PMID 27365210, Free PMC Article
    2. Sde2 is an intron-specific pre-mRNA splicing regulator activated by ubiquitin-like processing. Thakran P, et al. EMBO J, 2018 Jan 4. PMID 28947618, Free PMC Article
    3. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880
    4. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Stewart EV, et al. Mol Cell, 2011 Apr 22. PMID 21504829, Free PMC Article
    5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mRNA cis splicing, via spliceosome NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    part_of exon-exon junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of exon-exon junction complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4094025..4095148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019868.3 → NP_594439.1  RNA-binding protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594439.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O42847
      Conserved Domains (2) summary
      COG0724
      Location:1 → 118
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12324
      Location:4 → 90
      RRM_RBM8; RNA recognition motif in RNA-binding protein RBM8A, RBM8B nd similar proteins
    Nucleotide Protein
    Heading Accession and Version

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