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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_047122.1 RefSeqGene
- Range
-
5895..50168
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001253866.2 → NP_001240795.1 ATP-dependent zinc metalloprotease YME1L1 isoform 4
See identical proteins and their annotated locations for NP_001240795.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks two alternate in-frame exons compared to variant 1. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AI042625, AJ132637, AK297973, AL162272
- Consensus CDS
-
CCDS58072.1
- UniProtKB/TrEMBL
-
A8K5H7
- Related
- ENSP00000398713.2, ENST00000427324.6
- Conserved Domains (1) summary
-
- TIGR01241
Location:243 → 676
- FtsH_fam; ATP-dependent metalloprotease FtsH
-
NM_014263.4 → NP_055078.1 ATP-dependent zinc metalloprotease YME1L1 isoform 3
See identical proteins and their annotated locations for NP_055078.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an internal coding exon compared to transcript variant 1. However, it maintains the same reading frame, and encodes an isoform (3) that is missing a 57 aa segment compared to isoform 1.
- Source sequence(s)
-
AI042625, AJ132637, AL162272
- Consensus CDS
-
CCDS7151.1
- UniProtKB/TrEMBL
-
A8K5H7
- Related
- ENSP00000365184.3, ENST00000376016.8
- Conserved Domains (1) summary
-
- cl27568
Location:276 → 709
- TIP49; TIP49 C-terminus
-
NM_139312.3 → NP_647473.1 ATP-dependent zinc metalloprotease YME1L1 isoform 1
See identical proteins and their annotated locations for NP_647473.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AI042625, AJ132637, AL162272, DA395557, DA489399
- Consensus CDS
-
CCDS7152.1
- UniProtKB/Swiss-Prot
- B4DNM1, D3DRV8, D3DRV9, Q5T8D9, Q96TA2, Q9H1Q0, Q9UMR9
- UniProtKB/TrEMBL
-
Q96I63
- Related
- ENSP00000318480.3, ENST00000326799.7
- Conserved Domains (4) summary
-
- TIGR01241
Location:333 → 766
- FtsH_fam; ATP-dependent metalloprotease FtsH
- pfam00004
Location:375 → 506
- AAA; ATPase family associated with various cellular activities (AAA)
- pfam01434
Location:586 → 764
- Peptidase_M41; Peptidase family M41
- cl21455
Location:331 → 395
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
27110111..27154384 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011519300.4 → XP_011517602.1 ATP-dependent zinc metalloprotease YME1L1 isoform X1
- UniProtKB/TrEMBL
-
Q96I63
- Conserved Domains (4) summary
-
- TIGR01241
Location:300 → 733
- FtsH_fam; ATP-dependent metalloprotease FtsH
- pfam00004
Location:342 → 473
- AAA; ATPase family associated with various cellular activities (AAA)
- pfam01434
Location:553 → 731
- Peptidase_M41; Peptidase family M41
- cl21455
Location:298 → 362
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
27140165..27184407 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054364629.1 → XP_054220604.1 ATP-dependent zinc metalloprotease YME1L1 isoform X1
- UniProtKB/TrEMBL
-
Q96I63
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_139313.1: Suppressed sequence
- Description
- NM_139313.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.