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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_021296.2 RefSeqGene
- Range
-
5001..93475
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1194
mRNA and Protein(s)
-
NM_001111125.3 → NP_001104595.1 IQ motif and SEC7 domain-containing protein 2 isoform 1
See identical proteins and their annotated locations for NP_001104595.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AB011094, AC245102, AL139396
- Consensus CDS
-
CCDS48130.1
- UniProtKB/Swiss-Prot
- A0A1W2PQN3, B3KT97, C7SDG1, O60275, Q5JU85, Q5JUX1
- UniProtKB/TrEMBL
-
A0A9L9PY69
- Related
- ENSP00000495726.1, ENST00000642864.1
- Conserved Domains (3) summary
-
- pfam01369
Location:753 → 941
- Sec7; Sec7 domain
- pfam08614
Location:23 → 64
- ATG16; Autophagy protein 16 (ATG16)
- pfam16453
Location:961 → 1093
- IQ_SEC7_PH; PH domain
-
NM_001243197.2 → NP_001230126.1 IQ motif and SEC7 domain-containing protein 2 isoform 3
See identical proteins and their annotated locations for NP_001230126.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) shares no exons with variant 1, and differs in the 3' UTR and coding region compared to variant 2. The encoded isoform (3) is significantly shorter and has a distinct C-terminus, compared to isoform 2.
- Source sequence(s)
-
BC108674, BX119489
- Consensus CDS
-
CCDS87748.1
- UniProtKB/TrEMBL
-
A0A1W2PPD3
- Related
- ENSP00000491796.1, ENST00000639161.2
-
NM_001410736.1 → NP_001397665.1 IQ motif and SEC7 domain-containing protein 2 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC245102, AL139396
- Consensus CDS
-
CCDS94612.1
- UniProtKB/TrEMBL
-
A0A1W2PR28
- Related
- ENSP00000492403.1, ENST00000640694.1
-
NM_015075.2 → NP_055890.1 IQ motif and SEC7 domain-containing protein 2 isoform 2
See identical proteins and their annotated locations for NP_055890.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a novel ATG and an isoform (2) with distinct N- and C-termini, compared to isoform 1.
- Source sequence(s)
-
AB011094, AK095232
- Consensus CDS
-
CCDS35298.1
- UniProtKB/Swiss-Prot
-
Q5JU85
- Related
- ENSP00000364514.2, ENST00000375365.2
- Conserved Domains (2) summary
-
- pfam01369
Location:548 → 736
- Sec7; Sec7 domain
- pfam16453
Location:756 → 893
- IQ_SEC7_PH; PH domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
53225813..53321350 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047441928.1 → XP_047297884.1 IQ motif and SEC7 domain-containing protein 2 isoform X9
-
XM_006724582.5 → XP_006724645.1 IQ motif and SEC7 domain-containing protein 2 isoform X7
- Conserved Domains (3) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam08614
Location:23 → 64
- ATG16; Autophagy protein 16 (ATG16)
- pfam16453
Location:996 → 1125
- IQ_SEC7_PH; PH domain
-
XM_047441929.1 → XP_047297885.1 IQ motif and SEC7 domain-containing protein 2 isoform X11
-
XM_006724583.5 → XP_006724646.1 IQ motif and SEC7 domain-containing protein 2 isoform X8
- Conserved Domains (2) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam16453
Location:998 → 1125
- IQ_SEC7_PH; PH domain
-
XM_006724581.5 → XP_006724644.1 IQ motif and SEC7 domain-containing protein 2 isoform X5
- Conserved Domains (3) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam08614
Location:23 → 64
- ATG16; Autophagy protein 16 (ATG16)
- pfam16453
Location:996 → 1125
- IQ_SEC7_PH; PH domain
-
XM_047441932.1 → XP_047297888.1 IQ motif and SEC7 domain-containing protein 2 isoform X15
-
XM_006724584.4 → XP_006724647.1 IQ motif and SEC7 domain-containing protein 2 isoform X10
- Conserved Domains (3) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam08614
Location:23 → 64
- ATG16; Autophagy protein 16 (ATG16)
- pfam16453
Location:996 → 1125
- IQ_SEC7_PH; PH domain
-
XM_006724579.4 → XP_006724642.1 IQ motif and SEC7 domain-containing protein 2 isoform X1
- UniProtKB/TrEMBL
-
A0A9L9PY69
- Conserved Domains (3) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam08614
Location:23 → 64
- ATG16; Autophagy protein 16 (ATG16)
- pfam16453
Location:996 → 1125
- IQ_SEC7_PH; PH domain
-
XM_047441933.1 → XP_047297889.1 IQ motif and SEC7 domain-containing protein 2 isoform X16
-
XM_011530773.3 → XP_011529075.1 IQ motif and SEC7 domain-containing protein 2 isoform X4
See identical proteins and their annotated locations for XP_011529075.1
- UniProtKB/TrEMBL
-
A0A9L9PY69
- Conserved Domains (3) summary
-
- pfam01369
Location:516 → 704
- Sec7; Sec7 domain
- pfam16453
Location:724 → 861
- IQ_SEC7_PH; PH domain
- cl41729
Location:1081 → 1188
- KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins
-
XM_006724580.4 → XP_006724643.1 IQ motif and SEC7 domain-containing protein 2 isoform X3
See identical proteins and their annotated locations for XP_006724643.1
- UniProtKB/TrEMBL
-
A0A9L9PY69
- Conserved Domains (3) summary
-
- pfam01369
Location:548 → 736
- Sec7; Sec7 domain
- pfam16453
Location:756 → 893
- IQ_SEC7_PH; PH domain
- cl41729
Location:1113 → 1220
- KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins
-
XM_047441931.1 → XP_047297887.1 IQ motif and SEC7 domain-containing protein 2 isoform X14
-
XM_017029360.2 → XP_016884849.1 IQ motif and SEC7 domain-containing protein 2 isoform X2
- UniProtKB/TrEMBL
-
A0A9L9PY69
- Conserved Domains (2) summary
-
- pfam01369
Location:587 → 775
- Sec7; Sec7 domain
- pfam16453
Location:798 → 927
- IQ_SEC7_PH; PH domain
-
XM_011530774.4 → XP_011529076.1 IQ motif and SEC7 domain-containing protein 2 isoform X6
- Conserved Domains (2) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam16453
Location:998 → 1125
- IQ_SEC7_PH; PH domain
-
XM_011530777.3 → XP_011529079.1 IQ motif and SEC7 domain-containing protein 2 isoform X13
- Conserved Domains (2) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam16453
Location:998 → 1125
- IQ_SEC7_PH; PH domain
-
XM_011530776.3 → XP_011529078.1 IQ motif and SEC7 domain-containing protein 2 isoform X12
- Conserved Domains (3) summary
-
- pfam01369
Location:785 → 973
- Sec7; Sec7 domain
- pfam08614
Location:23 → 64
- ATG16; Autophagy protein 16 (ATG16)
- pfam16453
Location:996 → 1124
- IQ_SEC7_PH; PH domain
RNA
-
XR_938365.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
52512100..52607614 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326709.1 → XP_054182684.1 IQ motif and SEC7 domain-containing protein 2 isoform X7
-
XM_054326711.1 → XP_054182686.1 IQ motif and SEC7 domain-containing protein 2 isoform X9
-
XM_054326713.1 → XP_054182688.1 IQ motif and SEC7 domain-containing protein 2 isoform X11
-
XM_054326710.1 → XP_054182685.1 IQ motif and SEC7 domain-containing protein 2 isoform X8
-
XM_054326707.1 → XP_054182682.1 IQ motif and SEC7 domain-containing protein 2 isoform X5
-
XM_054326717.1 → XP_054182692.1 IQ motif and SEC7 domain-containing protein 2 isoform X15
-
XM_054326712.1 → XP_054182687.1 IQ motif and SEC7 domain-containing protein 2 isoform X10
-
XM_054326703.1 → XP_054182678.1 IQ motif and SEC7 domain-containing protein 2 isoform X1
- UniProtKB/TrEMBL
-
A0A9L9PY69
-
XM_054326718.1 → XP_054182693.1 IQ motif and SEC7 domain-containing protein 2 isoform X16
-
XM_054326706.1 → XP_054182681.1 IQ motif and SEC7 domain-containing protein 2 isoform X4
- UniProtKB/TrEMBL
-
A0A9L9PY69
-
XM_054326705.1 → XP_054182680.1 IQ motif and SEC7 domain-containing protein 2 isoform X3
- UniProtKB/TrEMBL
-
A0A9L9PY69
-
XM_054326716.1 → XP_054182691.1 IQ motif and SEC7 domain-containing protein 2 isoform X14
-
XM_054326704.1 → XP_054182679.1 IQ motif and SEC7 domain-containing protein 2 isoform X2
- UniProtKB/TrEMBL
-
A0A9L9PY69
-
XM_054326708.1 → XP_054182683.1 IQ motif and SEC7 domain-containing protein 2 isoform X6
-
XM_054326715.1 → XP_054182690.1 IQ motif and SEC7 domain-containing protein 2 isoform X13
-
XM_054326714.1 → XP_054182689.1 IQ motif and SEC7 domain-containing protein 2 isoform X12
RNA
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XR_008485472.1 RNA Sequence