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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001164417.3 → NP_001157889.1 protein SSX2 isoform b
See identical proteins and their annotated locations for NP_001157889.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon which results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (b) contains a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AC244505, BC016957, BC071827
- Consensus CDS
-
CCDS48129.1
- UniProtKB/Swiss-Prot
- Q16385, Q16404, Q5JS26, Q96IP7, Q9BU88
- Related
- ENSP00000470740.2, ENST00000596480.6
- Conserved Domains (3) summary
-
- cd07765
Location:24 → 61
- KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
- smart00349
Location:23 → 82
- KRAB; krueppel associated box
- pfam09514
Location:156 → 187
- SSXRD; SSXRD motif
-
NM_001278701.2 → NP_001265630.1 protein SSX2 isoform a
See identical proteins and their annotated locations for NP_001265630.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC244505, BC071827
- Consensus CDS
-
CCDS65267.1
- UniProtKB/Swiss-Prot
-
Q16385
- Related
- ENSP00000477922.1, ENST00000612490.1
- Conserved Domains (1) summary
-
- smart00349
Location:23 → 82
- KRAB; krueppel associated box
-
NM_001278702.2 → NP_001265631.1 protein SSX2 isoform c
See identical proteins and their annotated locations for NP_001265631.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (c) contains a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AC244505, BC016957, BC071827, BE391023
- UniProtKB/TrEMBL
-
R9QTR3
- Conserved Domains (3) summary
-
- cd07765
Location:24 → 61
- KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
- smart00349
Location:23 → 82
- KRAB; krueppel associated box
- pfam09514
Location:182 → 213
- SSXRD; SSXRD motif
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
52751252..52761536
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
52036196..52046488
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)