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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030415.2 RefSeqGene
- Range
-
5066..42121
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001251969.2 → NP_001238898.1 proton-coupled zinc antiporter SLC30A5 isoform 3
See identical proteins and their annotated locations for NP_001238898.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an exon in the 5' coding region, differs in the 3' UTR and lacks a large portion of the coding region, compared to variant 1. The encoded isoform (3) is significantly shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
BC017441, BC144349, DB090660
- Consensus CDS
-
CCDS58955.1
- UniProtKB/Swiss-Prot
-
Q8TAD4
- Related
- ENSP00000421251.1, ENST00000502979.1
-
NM_022902.5 → NP_075053.2 proton-coupled zinc antiporter SLC30A5 isoform 1
See identical proteins and their annotated locations for NP_075053.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AL833716, BX537394, DB090660
- Consensus CDS
-
CCDS3996.1
- UniProtKB/Swiss-Prot
- B7ZM89, Q6UX54, Q7L4M4, Q8TAD4, Q8TDG3, Q9BVY8, Q9H9H1
- Related
- ENSP00000379836.3, ENST00000396591.8
- Conserved Domains (2) summary
-
- TIGR01297
Location:428 → 729
- CDF; cation diffusion facilitator family transporter
- pfam01545
Location:428 → 649
- Cation_efflux; Cation efflux family
-
NM_024055.5 → NP_076960.1 proton-coupled zinc antiporter SLC30A5 isoform 2
See identical proteins and their annotated locations for NP_076960.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and lacks a large portion of the coding region, compared to variant 1. The encoded isoform (2) is significantly shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
BC017441, DB090660
- Consensus CDS
-
CCDS34173.1
- UniProtKB/Swiss-Prot
-
Q8TAD4
- Related
- ENSP00000370241.4, ENST00000380860.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
69094014..69131069
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006714672.5 → XP_006714735.1 proton-coupled zinc antiporter SLC30A5 isoform X2
- Conserved Domains (2) summary
-
- COG1230
Location:412 → 670
- CzcD; Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
- pfam01545
Location:428 → 649
- Cation_efflux; Cation efflux family
-
XM_005248569.4 → XP_005248626.1 proton-coupled zinc antiporter SLC30A5 isoform X1
- UniProtKB/TrEMBL
-
Q9H9X0
- Conserved Domains (2) summary
-
- TIGR01297
Location:387 → 688
- CDF; cation diffusion facilitator family transporter
- pfam01545
Location:387 → 608
- Cation_efflux; Cation efflux family
-
XM_017009749.2 → XP_016865238.1 proton-coupled zinc antiporter SLC30A5 isoform X3
- UniProtKB/TrEMBL
-
Q9H9X0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
69916495..69953585
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054353179.1 → XP_054209154.1 proton-coupled zinc antiporter SLC30A5 isoform X2
-
XM_054353178.1 → XP_054209153.1 proton-coupled zinc antiporter SLC30A5 isoform X1
- UniProtKB/TrEMBL
-
Q9H9X0
-
XM_054353180.1 → XP_054209155.1 proton-coupled zinc antiporter SLC30A5 isoform X3
- UniProtKB/TrEMBL
-
Q9H9X0