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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_034108.1 RefSeqGene
- Range
-
11597..76096
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001145293.2 → NP_001138765.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 2
See identical proteins and their annotated locations for NP_001138765.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) includes an alternate exon that causes a frameshift and lacks an alternate exon which restores the reading frame, compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.
- Source sequence(s)
-
AC092798, BC000963, BC007226, BQ017148
- Consensus CDS
-
CCDS46778.1
- UniProtKB/TrEMBL
-
A0A0C4DFP4
- Related
- ENSP00000387430.1, ENST00000428257.5
- Conserved Domains (3) summary
-
- cd10459
Location:19 → 109
- PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
- pfam01841
Location:275 → 334
- Transglut_core; Transglutaminase-like superfamily
- pfam04721
Location:439 → 633
- PAW; PNGase C-terminal domain, mannose-binding module PAW
-
NM_001145294.2 → NP_001138766.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 3
See identical proteins and their annotated locations for NP_001138766.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AK296047, BQ017148, DC329733
- Consensus CDS
-
CCDS46777.1
- UniProtKB/TrEMBL
-
A0A6Q8PF23
- Related
- ENSP00000389888.2, ENST00000417874.6
- Conserved Domains (5) summary
-
- COG1305
Location:251 → 312
- YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
- pfam01841
Location:233 → 312
- Transglut_core; Transglutaminase-like superfamily
- pfam03835
Location:296 → 349
- Rad4; Rad4 transglutaminase-like domain
- pfam04721
Location:415 → 609
- PAW; PNGase C-terminal domain, mannose-binding module PAW
- cl15262
Location:1 → 67
- PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
-
NM_001145295.2 → NP_001138767.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 3' coding region, which results in a frameshift and an early stop codon compared to variant 1. The encoded isoform (4) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC092798, BC007226, BC017220, BQ017148
- Consensus CDS
-
CCDS46779.1
- UniProtKB/TrEMBL
-
A0A6Q8PF23
- Related
- ENSP00000379886.3, ENST00000396649.7
- Conserved Domains (4) summary
-
- cd10459
Location:19 → 109
- PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
- pfam01841
Location:275 → 354
- Transglut_core; Transglutaminase-like superfamily
- pfam03835
Location:338 → 392
- Rad4; Rad4 transglutaminase-like domain
- cl10509
Location:457 → 538
- PAW; PNGase C-terminal domain, mannose-binding module PAW
-
NM_018297.4 → NP_060767.2 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 1
See identical proteins and their annotated locations for NP_060767.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC092798, BC007226, BQ017148
- Consensus CDS
-
CCDS33719.1
- UniProtKB/Swiss-Prot
- B4DJE9, Q59FB1, Q6PJD8, Q96IV0, Q9BVR8, Q9NR70
- UniProtKB/TrEMBL
-
A0A6Q8PF23
- Related
- ENSP00000280700.5, ENST00000280700.10
- Conserved Domains (4) summary
-
- cd10459
Location:19 → 109
- PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
- pfam03835
Location:338 → 391
- Rad4; Rad4 transglutaminase-like domain
- pfam01841
Location:275 → 354
- Transglut_core; Transglutaminase-like superfamily
- pfam04721
Location:457 → 651
- PAW; PNGase C-terminal domain, mannose-binding module PAW
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
25718944..25790039 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005265317.1 → XP_005265374.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X6
- Conserved Domains (5) summary
-
- cd10459
Location:19 → 109
- PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
- COG1305
Location:293 → 354
- YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
- pfam01841
Location:275 → 354
- Transglut_core; Transglutaminase-like superfamily
- pfam03835
Location:338 → 391
- Rad4; Rad4 transglutaminase-like domain
- cl10509
Location:416 → 483
- PAW; PNGase C-terminal domain, mannose-binding module PAW
-
XM_005265316.1 → XP_005265373.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X1
- UniProtKB/TrEMBL
-
A0A6Q8PF23
- Conserved Domains (5) summary
-
- cd10459
Location:19 → 109
- PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
- COG1305
Location:293 → 354
- YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
- pfam01841
Location:275 → 354
- Transglut_core; Transglutaminase-like superfamily
- pfam03835
Location:338 → 391
- Rad4; Rad4 transglutaminase-like domain
- pfam04721
Location:416 → 596
- PAW; PNGase C-terminal domain, mannose-binding module PAW
-
XM_047448558.1 → XP_047304514.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X7
-
XM_047448556.1 → XP_047304512.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X3
- UniProtKB/TrEMBL
-
A0A0C4DFP4
-
XM_047448557.1 → XP_047304513.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X5
- UniProtKB/TrEMBL
-
A0A0C4DFP4
-
XM_011533944.1 → XP_011532246.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X4
See identical proteins and their annotated locations for XP_011532246.1
- UniProtKB/TrEMBL
-
A0A6Q8PF23
- Related
-
ENST00000674841.1
- Conserved Domains (5) summary
-
- COG1305
Location:216 → 277
- YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
- pfam01841
Location:198 → 277
- Transglut_core; Transglutaminase-like superfamily
- pfam03835
Location:261 → 314
- Rad4; Rad4 transglutaminase-like domain
- pfam04721
Location:380 → 574
- PAW; PNGase C-terminal domain, mannose-binding module PAW
- cl15262
Location:1 → 32
- PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
-
XM_017006839.3 → XP_016862328.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X2
- UniProtKB/TrEMBL
-
A0A6Q8PF23
-
XM_047448561.1 → XP_047304517.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X9
-
XM_047448560.1 → XP_047304516.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X8
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
25721799..25792805 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054347237.1 → XP_054203212.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X6
-
XM_054347232.1 → XP_054203207.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X1
- UniProtKB/TrEMBL
-
A0A6Q8PF23
-
XM_054347238.1 → XP_054203213.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X7
-
XM_054347234.1 → XP_054203209.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X3
- UniProtKB/TrEMBL
-
A0A0C4DFP4
-
XM_054347236.1 → XP_054203211.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X5
- UniProtKB/TrEMBL
-
A0A0C4DFP4
-
XM_054347235.1 → XP_054203210.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X4
- UniProtKB/TrEMBL
-
A0A6Q8PF23
-
XM_054347233.1 → XP_054203208.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X2
- UniProtKB/TrEMBL
-
A0A6Q8PF23
-
XM_054347240.1 → XP_054203215.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X9
-
XM_054347239.1 → XP_054203214.1 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X8
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_025105.1: Suppressed sequence
- Description
- NM_025105.1: This RefSeq was permanently suppressed because it is primarily intronic sequence.