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    LINC02099 long intergenic non-protein coding RNA 2099 [ Homo sapiens (human) ]

    Gene ID: 101929450, updated on 19-Sep-2024

    Summary

    Official Symbol
    LINC02099provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2099provided by HGNC
    Primary source
    HGNC:HGNC:52953
    See related
    Ensembl:ENSG00000253490 AllianceGenome:HGNC:52953
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Slt
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02099 in Genome Data Viewer
    Location:
    8p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (29748309..29798492)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (30026711..30076868)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (29605825..29656008)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901926 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:29525986-29527185 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27204 Neighboring gene long intergenic non-protein coding RNA 589 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:29594328-29595186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27205 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:29627558-29628757 Neighboring gene uncharacterized LOC101929470 Neighboring gene uncharacterized LOC107986884

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125814.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shortest transcript.
      Source sequence(s)
      AC145110, BC015784, BC073951, BC082237
      Related
      ENST00000523123.5
    2. NR_125815.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site at an internal exon, resulting in a longer transcript than variant 1.
      Source sequence(s)
      AC145110, BC015784, BC047326, BC073951
      Related
      ENST00000517491.1
    3. NR_125816.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks multiple exons and contains two alternate 3' exons, resulting in a longer transcript than variant 1.
      Source sequence(s)
      AC137741, BC073951
      Related
      ENST00000522158.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      29748309..29798492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      30026711..30076868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)