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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001278926.2 → NP_001265855.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) includes an alternate exon in the 5' region and uses a downstream start codon, compared to variant 1. It encodes isoform 2 which is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC008560, AK300022, BC015385
- Consensus CDS
-
CCDS64161.1
- UniProtKB/TrEMBL
- B4DT22, F5H7P7
- Related
- ENSP00000442371.1, ENST00000535264.5
- Conserved Domains (4) summary
-
- COG2319
Location:59 → 276
- WD40; WD40 repeat [General function prediction only]
- cd01927
Location:465 → 613
- cyclophilin_WD40; cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. ...
- sd00039
Location:106 → 147
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:59 → 288
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001278927.2 → NP_001265856.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform 3
See identical proteins and their annotated locations for NP_001265856.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site and uses a downstream start codon compared to variant 1. It encodes isoform 3 which is shorter and has a distinct N-terminus compared to isoform 1. Translation is predicted to
- Source sequence(s)
-
AC008560, AK298175, BC015385, DB454273
- UniProtKB/TrEMBL
-
B4DP34
- Conserved Domains (4) summary
-
- COG2319
Location:51 → 189
- WD40; WD40 repeat [General function prediction only]
- cd01927
Location:355 → 503
- cyclophilin_WD40; cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. ...
- sd00039
Location:39 → 81
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:53 → 178
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001278929.2 → NP_001265858.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform 4
See identical proteins and their annotated locations for NP_001265858.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region and uses a downstream start codon, compared to variant 1. It encodes isoform 4 which has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC008560, AK301654, BC015385, D38552, DB454273
- Consensus CDS
-
CCDS64162.1
- UniProtKB/Swiss-Prot
-
Q96BP3
- Related
- ENSP00000444496.1, ENST00000538977.5
- Conserved Domains (4) summary
-
- COG2319
Location:35 → 173
- WD40; WD40 repeat [General function prediction only]
- cd01927
Location:339 → 487
- cyclophilin_WD40; cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. ...
- sd00039
Location:23 → 65
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:37 → 162
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_015342.4 → NP_056157.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_056157.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BM669378, D38552, DB454273
- Consensus CDS
-
CCDS3985.1
- UniProtKB/Swiss-Prot
- B4DWR9, Q15002, Q7KZ89, Q96BP3
- UniProtKB/TrEMBL
- A0A384MTS1, B4DT22
- Related
- ENSP00000261308.4, ENST00000261308.10
- Conserved Domains (3) summary
-
- cd01927
Location:495 → 643
- cyclophilin_WD40; cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the ...
- sd00039
Location:136 → 177
- 7WD40; WD40 repeat [structural motif]
- cl29593
Location:89 → 318
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
65563296..65587549
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047417048.1 → XP_047273004.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
B4DT22
-
XM_047417049.1 → XP_047273005.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
66385056..66409311
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054352248.1 → XP_054208223.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
B4DT22
-
XM_054352249.1 → XP_054208224.1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X2