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    Rdh18-ps retinol dehydrogenase 18, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 380674, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Rdh18-psprovided by MGI
    Official Full Name
    retinol dehydrogenase 18, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:2687008
    See related
    AllianceGenome:MGI:2687008
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rdh18
    Summary
    Acts upstream of or within response to bacterium. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in liver adult (RPKM 13.0), liver E18 (RPKM 3.1) and 5 other tissues See more
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    Genomic context

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    See Rdh18-ps in Genome Data Viewer
    Location:
    10 D3; 10 75.97 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127660085..127682434)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127824216..127846565)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_28237 Neighboring gene retinol dehydrogenase 9 Neighboring gene retinol dehydrogenase 16 Neighboring gene STARR-seq mESC enhancer starr_28238 Neighboring gene STARR-seq mESC enhancer starr_28239 Neighboring gene STARR-seq mESC enhancer starr_28240 Neighboring gene retinol dehydrogenase 19 Neighboring gene RDH16 family member 2 Neighboring gene predicted gene, 31091

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Comparative genomic and phylogenetic analysis of short-chain dehydrogenases/reductases with dual retinol/sterol substrate specificity. Belyaeva OV, et al. Genomics, 2006 Dec. PMID 16860536
    2. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • cis-retinol/3alpha-hydroxysterol short-chain dehydrogenase
    • cis-retinol/3alpha-hydroxysterol short-chain dehydrogenasecis-retinol/3alpha-hydroxysterol short-chain dehydrogenasecis-retinol/3alpha-hydroxysterol short-chain dehydrogenase

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037604.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC131690

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      127660085..127682434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_007059.1: Suppressed sequence

      Description
      NG_007059.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NG_012315.1: Suppressed sequence

      Description
      NG_012315.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    3. NM_199313.1: Suppressed sequence

      Description
      NM_199313.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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