U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    VENTXP7 VENT homeobox pseudogene 7 [ Homo sapiens (human) ]

    Gene ID: 391518, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    VENTXP7provided by HGNC
    Official Full Name
    VENT homeobox pseudogene 7provided by HGNC
    Primary source
    HGNC:HGNC:13638
    See related
    AllianceGenome:HGNC:13638
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HPX42; VENTX1
    Summary
    Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the Vent homeobox gene family. [provided by RefSeq, Jul 2008]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VENTXP7 in Genome Data Viewer
    Location:
    3p24.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (21405726..21406708)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (21416182..21417170)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (21447218..21448200)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376987 Neighboring gene uncharacterized LOC105376988 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:21245759-21245949 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:21440269-21440769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21447352-21447855 Neighboring gene zinc finger protein 385D Neighboring gene NANOG hESC enhancer GRCh37_chr3:21558661-21559162 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21584849-21585429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:21589175-21589999 Neighboring gene ZNF385D antisense RNA 1 Neighboring gene MPRA-validated peak4572 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68017 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68021 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68035 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68037 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68058 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68089 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68153 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68192 Neighboring gene ZNF385D antisense RNA 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular cloning of a human Vent-like homeobox gene. Moretti PA, et al. Genomics, 2001 Aug. PMID 11549314
    2. Identification of homeobox genes expressed in human haemopoietic progenitor cells. Moretti P, et al. Gene, 1994 Jul 8. PMID 7518789
    3. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. Deng X, et al. PLoS One, 2013. PMID 24324551, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Other Names

    • VENT-like homeobox 1
    • VENT-like homeobox pseudogene 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002311.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC104183

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      21405726..21406708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      21416182..21417170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials