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    LOC105375026 uncharacterized LOC105375026 [ Homo sapiens (human) ]

    Gene ID: 105375026, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105375026
    Gene description
    uncharacterized LOC105375026
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.6) See more
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    Genomic context

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    See LOC105375026 in Genome Data Viewer
    Location:
    6p21.31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (33893129..33918200)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (33714324..33739398)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (33860906..33885977)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33817822-33818352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33820767-33821549 Neighboring gene uncharacterized LOC105375027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33830758-33831258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33846380-33846880 Neighboring gene long intergenic non-protein coding RNA 1016 Neighboring gene uncharacterized LOC107986590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24372 Neighboring gene microRNA 7159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24374 Neighboring gene uncharacterized LOC124901307 Neighboring gene Sharpr-MPRA regulatory region 1001 Neighboring gene uncharacterized LOC124901308

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187840.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL138889

    2. NR_187841.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL138889

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      33893129..33918200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      33714324..33739398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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