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    Mcf2 mcf.2 transforming sequence [ Mus musculus (house mouse) ]

    Gene ID: 109904, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mcf2provided by MGI
    Official Full Name
    mcf.2 transforming sequenceprovided by MGI
    Primary source
    MGI:MGI:96932
    See related
    Ensembl:ENSMUSG00000031139 AllianceGenome:MGI:96932
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dbl; Mcf-2; B230117G22Rik
    Summary
    Enables guanyl-nucleotide exchange factor activity. Acts upstream of or within cellular response to leukemia inhibitory factor and dendrite development. Predicted to be active in cytoplasm. Predicted to be extrinsic component of membrane. Is expressed in femur; fibula; and tibia. Orthologous to human MCF2 (MCF.2 cell line derived transforming sequence). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 1.2), cortex adult (RPKM 0.7) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Mcf2 in Genome Data Viewer
    Location:
    X A6; X 33.5 cM
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (59101316..59224546, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (60055956..60179184, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene coagulation factor IX Neighboring gene predicted pseudogene 5637 Neighboring gene STARR-seq mESC enhancer starr_47238 Neighboring gene STARR-seq mESC enhancer starr_47239 Neighboring gene STARR-seq mESC enhancer starr_47240 Neighboring gene ATPase, class VI, type 11C Neighboring gene STARR-seq mESC enhancer starr_47242 Neighboring gene predicted gene, 22287 Neighboring gene microRNA 505

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC159138

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables guanyl-nucleotide exchange factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables guanyl-nucleotide exchange factor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in dendrite development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within dendrite development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289730.2NP_001276659.1  proto-oncogene DBL isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK032122, AK045424, AL670778, AL671984
      Consensus CDS
      CCDS81129.1
      UniProtKB/TrEMBL
      A2AET8, Q7TNJ5
      Related
      ENSMUSP00000033478.5, ENSMUST00000033478.5
      Conserved Domains (5) summary
      cd00160
      Location:511688
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      pfam00169
      Location:727823
      PH; PH domain
      cl02488
      Location:225416
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:2085
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:695826
      PH-like; Pleckstrin homology-like domain
    2. NM_001289731.2NP_001276660.1  proto-oncogene DBL isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL670778, AL671984, AL929279
      Consensus CDS
      CCDS72384.1
      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Related
      ENSMUSP00000067075.5, ENSMUST00000063507.11
      Conserved Domains (5) summary
      smart00516
      Location:128268
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      cd00160
      Location:678855
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      pfam00169
      Location:877990
      PH; PH domain
      cl02488
      Location:408599
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:862993
      PH-like; Pleckstrin homology-like domain
    3. NM_001358998.1NP_001345927.1  proto-oncogene DBL isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL670778, AL671984, AL929279
      UniProtKB/TrEMBL
      Q7TNJ5
      Conserved Domains (4) summary
      cd00160
      Location:472649
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      pfam13716
      Location:1973
      CRAL_TRIO_2; Divergent CRAL/TRIO domain
      cl02488
      Location:186377
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:656787
      PH-like; Pleckstrin homology-like domain
    4. NM_001358999.1NP_001345928.1  proto-oncogene DBL isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL670778, AL671984, AL929279
      UniProtKB/TrEMBL
      Q99N72
      Conserved Domains (4) summary
      cd00160
      Location:456633
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      pfam13716
      Location:1973
      CRAL_TRIO_2; Divergent CRAL/TRIO domain
      cl02488
      Location:186377
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:640771
      PH-like; Pleckstrin homology-like domain
    5. NM_001359000.1NP_001345929.1  proto-oncogene DBL isoform 6

      Status: VALIDATED

      Source sequence(s)
      AL670778, AL671984, AL929279
      UniProtKB/TrEMBL
      Q99N72
      Conserved Domains (4) summary
      cd00160
      Location:455632
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:219376
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:2085
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:639770
      PH-like; Pleckstrin homology-like domain
    6. NM_001359001.1NP_001345930.1  proto-oncogene DBL isoform 7

      Status: VALIDATED

      Source sequence(s)
      AL670778, AL671984, AL929279
      UniProtKB/TrEMBL
      Q99N72
      Conserved Domains (4) summary
      cd00160
      Location:416593
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      pfam13716
      Location:1973
      CRAL_TRIO_2; Divergent CRAL/TRIO domain
      cl02488
      Location:180337
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:600731
      PH-like; Pleckstrin homology-like domain
    7. NM_133197.5NP_573460.2  proto-oncogene DBL isoform 2

      See identical proteins and their annotated locations for NP_573460.2

      Status: VALIDATED

      Source sequence(s)
      AK032122, AK045424, AL670778, AL671984
      Consensus CDS
      CCDS30160.1
      UniProtKB/TrEMBL
      Q8C067, Q99N72
      Related
      ENSMUSP00000099070.4, ENSMUST00000101531.10
      Conserved Domains (5) summary
      cd00160
      Location:495672
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      pfam00169
      Location:711807
      PH; PH domain
      cl02488
      Location:225416
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:2085
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:679810
      PH-like; Pleckstrin homology-like domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      59101316..59224546 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251191.2XP_030107051.1  proto-oncogene DBL isoform X7

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      cd00160
      Location:615792
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:363520
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:128239
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:799930
      PH-like; Pleckstrin homology-like domain
    2. XM_030251192.2XP_030107052.1  proto-oncogene DBL isoform X8

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      cd00160
      Location:599776
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:363520
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:128239
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:783914
      PH-like; Pleckstrin homology-like domain
    3. XM_006527743.4XP_006527806.1  proto-oncogene DBL isoform X5

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      cd00160
      Location:639816
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:369560
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:128239
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:823954
      PH-like; Pleckstrin homology-like domain
    4. XM_017318343.2XP_017173832.1  proto-oncogene DBL isoform X2

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      cd00160
      Location:655832
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:369560
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:128239
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:839970
      PH-like; Pleckstrin homology-like domain
    5. XM_017318345.2XP_017173834.1  proto-oncogene DBL isoform X6

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      smart00516
      Location:128268
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      cd00160
      Location:638815
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:402559
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:822953
      PH-like; Pleckstrin homology-like domain
    6. XM_017318344.2XP_017173833.1  proto-oncogene DBL isoform X3

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      smart00516
      Location:128268
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      cd00160
      Location:654831
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:402559
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:838969
      PH-like; Pleckstrin homology-like domain
    7. XM_036161775.1XP_036017668.1  proto-oncogene DBL isoform X4

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      smart00516
      Location:128268
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      cd00160
      Location:694841
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:408599
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:833967
      PH-like; Pleckstrin homology-like domain
    8. XM_006527750.4XP_006527813.1  proto-oncogene DBL isoform X1

      UniProtKB/TrEMBL
      A2AEU1, Q8BLE2
      Conserved Domains (4) summary
      smart00516
      Location:128268
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      cd00160
      Location:694871
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:408599
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:8781009
      PH-like; Pleckstrin homology-like domain
    9. XM_036161777.1XP_036017670.1  proto-oncogene DBL isoform X11

      UniProtKB/TrEMBL
      Q99N72
      Conserved Domains (3) summary
      cd00160
      Location:456603
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:186377
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:595729
      PH-like; Pleckstrin homology-like domain
    10. XM_017318347.2XP_017173836.1  proto-oncogene DBL isoform X9

      UniProtKB/TrEMBL
      Q7TNJ5
      Conserved Domains (4) summary
      cd00160
      Location:471648
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:219376
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:2085
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:655786
      PH-like; Pleckstrin homology-like domain
    11. XM_036161776.1XP_036017669.1  proto-oncogene DBL isoform X10

      UniProtKB/TrEMBL
      Q99N72
      Conserved Domains (4) summary
      cd00160
      Location:495642
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl02488
      Location:225416
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl15787
      Location:2085
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      cl17171
      Location:634768
      PH-like; Pleckstrin homology-like domain

    RNA

    1. XR_004940317.1 RNA Sequence