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    SUA suppressor of abi3-5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824590, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SUA
    Official Full Name
    suppressor of abi3-5
    Primary source
    TAIR:AT3G54230
    Locus tag
    AT3G54230
    See related
    Araport:AT3G54230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    suppressor of abi3-5
    Summary
    Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5. Controls alternative splicing of the developmental regulator ABI3.
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    Genomic context

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    See SUA in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (20073028..20080384)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L17 family protein Neighboring gene GRAS family transcription factor Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene GHMP kinase family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 36

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis. Sugliani M, et al. Plant Cell, 2010 Jun. PMID 20525852, Free PMC Article
    2. Splicing of receptor-like kinase-encoding SNC4 and CERK1 is regulated by two conserved splicing factors that are required for plant immunity. Zhang Z, et al. Mol Plant, 2014 Dec. PMID 25267732, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SUPPRESSOR OF ABI3-5 is a novel plant splicing factor that influences seed maturation by controlling alternative splicing of ABI3.
      Title: The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001203155.1
    NM_115283.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    suppressor of abi3-5
    NP_001190084.1
    • suppressor of abi3-5 (SUA); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2).
    NP_190991.2
    • suppressor of abi3-5 (SUA); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 996294 Blast hits to 498601 proteins in 22091 species: Archae - 21896; Bacteria - 611740; Metazoa - 183692; Fungi - 26269; Plants - 56661; Viruses - 72133; Other Eukaryotes - 23903 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20073028..20080384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339653.1 → NP_001325865.1  suppressor of abi3-5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGN6, A0A1I9LMI6

    2. NM_001339654.1 → NP_001325863.1  suppressor of abi3-5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF55, A0A1I9LMI4

    3. NM_001339655.1 → NP_001325864.1  suppressor of abi3-5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D5L2Y2, F4JCU0, Q8VYR8, Q9M383
      UniProtKB/TrEMBL
      A0A654FGJ9

    4. NM_115283.3 → NP_190991.2  suppressor of abi3-5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D5L2Y2, F4JCU0, Q8VYR8, Q9M383
      UniProtKB/TrEMBL
      A0A654FGJ9
      Conserved Domains (6) summary
      PHA02896
      Location:74 → 219
      PHA02896; A-type inclusion like protein; Provisional
      smart00443
      Location:926 → 970
      G_patch; glycine rich nucleic binding domain
      smart00547
      Location:381 → 404
      ZnF_RBZ; Zinc finger domain
      cd12313
      Location:430 → 510
      RRM1_RRM2_RBM5_like; RNA recognition motif 1 and 2 in RNA-binding protein 5 (RBM5) and similar proteins
      sd00029
      Location:382 → 401
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd16166
      Location:578 → 630
      OCRE_SUA_like; OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins

    5. NM_001203155.1 → NP_001190084.1  suppressor of abi3-5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FGJ9
      Conserved Domains (6) summary
      PHA02896
      Location:74 → 219
      PHA02896; A-type inclusion like protein; Provisional
      smart00443
      Location:927 → 971
      G_patch; glycine rich nucleic binding domain
      smart00547
      Location:382 → 405
      ZnF_RBZ; Zinc finger domain
      cd12313
      Location:431 → 511
      RRM1_RRM2_RBM5_like; RNA recognition motif 1 and 2 in RNA-binding protein 5 (RBM5) and similar proteins
      sd00029
      Location:383 → 402
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd16166
      Location:579 → 631
      OCRE_SUA_like; OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JCU0.2

    Gene LinkOut

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