SGR5 C2H2-like zinc finger protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: SGR5
Official Full Name: C2H2-like zinc finger protein
Primary source: TAIR:AT2G01940
Locus tag: AT2G01940
See related: Araport:AT2G01940
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15; ATIDD15; F14H20.1; F14H20_1; IDD15; INDETERMINATE(ID)-DOMAIN 15; SHOOT GRAVITROPISM 5
Summary: May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See SGR5 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 4

Sequence:: Chromosome: 2; NC_003071.7 (432195..435100)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

the identification of INDETERMINATE DOMAIN15 (IDD15) and INDOLE-3-ACETIC ACID 17 (IAA17) in Arabidopsis that interacted with ZAT6 in vivo provided new insight of ZAT6-mediated auxin signaling. Further investigation showed that ZAT6 repressed the transcription activation of IDD15 on the YUC2 promoter
Title: Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
The thermoresponsive alternative splicing of SGR5 is proposed to provide an adaptation strategy by which plants protect the shoots from hot air under high temperature stress in natural habitats.
Title: High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
Loss of SGR5 regulatory activity affects starch accumulation in Arabidopsis shoot tissues and causes decreased sensitivity to gravity and diminished circumnutational movements.
Title: Altered gravitropic response, amyloplast sedimentation and circumnutation in the Arabidopsis shoot gravitropism 5 mutant are associated with reduced starch levels.
SGR5 may be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. [SGR5]
Title: A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

NM_001035872.3

Supported by ESTs:

NM_001084399.1

Supported by ESTs:

NM_126255.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within circumnutation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within detection of gravity	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within floral organ morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within gravitropism	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within leaf morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within negative gravitropism	IMP Inferred from Mutant Phenotype more info	PubMed
NOT involved_in positive gravitropism	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within positive regulation of auxin biosynthetic process	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within regulation of auxin polar transport	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of starch metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: C2H2-like zinc finger protein

NP_001030949.2

SHOOT GRAVITROPISM 5 (SGR5); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.2); Has 5058 Blast hits to 4353 proteins in 195 species: Archae - 1; Bacteria - 0; Metazoa - 3999; Fungi - 151; Plants - 716; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).

NP_001077868.1

SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink).

NP_178303.2

SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

432195..435100

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_126255.4 → NP_178303.2 C2H2-like zinc finger protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

B3H5E9, F4IPE3, Q0WVN8, Q2V4B1, Q9ZPT0

UniProtKB/TrEMBL

A0A178VUU8, A0A5S9WWG9, A0A7G2E4U0

Conserved Domains (2) summary

sd00017
Location:153 → 172

ZF_C2H2; C2H2 Zn finger [structural motif]

cd06503
Location:337 → 386

ATP-synt_Fo_b; F-type ATP synthase, membrane subunit b
NM_001084399.1 → NP_001077868.1 C2H2-like zinc finger protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2E4U0

Conserved Domains (2) summary

sd00017
Location:75 → 95

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21478
Location:332 → 422

ATP-synt_B; ATP synthase B/B' CF(0)
NM_001035872.3 → NP_001030949.2 C2H2-like zinc finger protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2E4U0

Conserved Domains (2) summary

sd00017
Location:64 → 83

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21478
Location:242 → 307

ATP-synt_B; ATP synthase B/B' CF(0)