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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001359895.1 → NP_001346824.1 SH3 domain and tetratricopeptide repeat-containing protein 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
- Source sequence(s)
-
AC122871, AK167283
- Consensus CDS
-
CCDS19234.2
- UniProtKB/TrEMBL
- G3X9F6, Q3TXV8, Q3UDI4
- Related
- ENSMUSP00000144175.2, ENSMUST00000201511.2
- Conserved Domains (3) summary
-
- cd11885
Location:313 → 367
- SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
- sd00006
Location:1163 → 1190
- TPR; TPR repeat [structural motif]
- pfam13424
Location:1166 → 1231
- TPR_12; Tetratricopeptide repeat
-
NM_194344.2 → NP_919325.2 SH3 domain and tetratricopeptide repeat-containing protein 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
- Source sequence(s)
-
AK150064, AK159089, BY201660, BY513538
- Consensus CDS
-
CCDS19234.2
- UniProtKB/TrEMBL
- G3X9F6, Q3TXV8, Q3UDI4
- Related
- ENSMUSP00000070610.8, ENSMUST00000070203.14
- Conserved Domains (3) summary
-
- cd11885
Location:313 → 367
- SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
- sd00006
Location:1163 → 1190
- TPR; TPR repeat [structural motif]
- pfam13424
Location:1166 → 1231
- TPR_12; Tetratricopeptide repeat
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
35854524..35897331 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006503904.4 → XP_006503967.1 SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
- UniProtKB/TrEMBL
- G3X9F6, Q3TXV8, Q3UDI4
- Related
- ENSMUSP00000115376.2, ENSMUST00000127825.8
- Conserved Domains (3) summary
-
- cd11885
Location:313 → 367
- SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
- sd00006
Location:1163 → 1190
- TPR; TPR repeat [structural motif]
- pfam13424
Location:1166 → 1231
- TPR_12; Tetratricopeptide repeat
-
XM_036165020.1 → XP_036020913.1 SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X2
- UniProtKB/TrEMBL
- Q3TXV8, Q3UDI4
- Conserved Domains (3) summary
-
- cd11885
Location:288 → 342
- SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
- sd00006
Location:1138 → 1165
- TPR; TPR repeat [structural motif]
- pfam13424
Location:1141 → 1206
- TPR_12; Tetratricopeptide repeat
-
XM_036165021.1 → XP_036020914.1 SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X3
- UniProtKB/TrEMBL
- Q3TXV8, Q3UDI4
- Conserved Domains (3) summary
-
- cd11885
Location:119 → 173
- SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
- sd00006
Location:969 → 996
- TPR; TPR repeat [structural motif]
- pfam13424
Location:972 → 1037
- TPR_12; Tetratricopeptide repeat
-
XM_006503905.3 → XP_006503968.1 SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4
- UniProtKB/TrEMBL
-
Q6KAR4
- Conserved Domains (2) summary
-
- sd00006
Location:813 → 840
- TPR; TPR repeat [structural motif]
- pfam13424
Location:816 → 881
- TPR_12; Tetratricopeptide repeat