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    HOXD-AS2 HOXD cluster antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 100506783, updated on 17-Sep-2024

    Summary

    Official Symbol
    HOXD-AS2provided by HGNC
    Official Full Name
    HOXD cluster antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:43756
    See related
    AllianceGenome:HGNC:43756
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in fat (RPKM 4.1), kidney (RPKM 3.5) and 8 other tissues See more
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    Genomic context

    See HOXD-AS2 in Genome Data Viewer
    Location:
    2q31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (176134841..176137098, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (176622992..176625240, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (176999569..177001826, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene homeobox D9 Neighboring gene uncharacterized LOC100129455 Neighboring gene homeobox D8 Neighboring gene uncharacterized LOC401021 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:177012925-177013468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:177015997-177016730 Neighboring gene microRNA 10b Neighboring gene homeobox D4 Neighboring gene homeobox D3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038435.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009336

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      176134841..176137098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      176622992..176625240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)