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    hAT dimerization domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821009, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hAT dimerization domain-containing protein
    Primary source
    TAIR:AT3G17450
    Locus tag
    AT3G17450
    See related
    Araport:AT3G17450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (5972580..5976211, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Nucleotide-sugar transporter family protein Neighboring gene Putative plant snare 13 Neighboring gene PHD finger family protein Neighboring gene ribosomal protein L3 plastid Neighboring gene Ca2+-activated RelA/spot-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338290.1
    NM_112624.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hAT dimerization domain-containing protein
    NP_188371.1
    • hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5972580..5976211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112624.4 → NP_188371.1  hAT dimerization domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDE8, A0A654F954, A0A7G2EJ00, Q0WQA4
      Conserved Domains (3) summary
      pfam04937
      Location:342 → 493
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:716 → 785
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      cl02703
      Location:133 → 171
      zf-BED; BED zinc finger

    2. NM_001338290.1 → NP_001326974.1  hAT dimerization domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDE8, A0A654F954, A0A7G2EJ00, Q0WQA4
      Conserved Domains (3) summary
      pfam04937
      Location:342 → 493
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:716 → 785
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      cl02703
      Location:133 → 171
      zf-BED; BED zinc finger
    Nucleotide Protein
    Heading Accession and Version

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