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    RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821572, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT3G20280
    Locus tag
    AT3G20280
    See related
    Araport:AT3G20280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (7071193..7074697)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DUF1666 family protein (DUF1666) Neighboring gene lipid-binding serum glycoprotein family protein Neighboring gene EPS15 homology domain 1 Neighboring gene extracellular ligand-gated ion channel protein (DUF3537)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338471.1
    NM_001338472.1
    NM_001338473.1
    NM_112919.3
    NM_180676.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_566656.3
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 12041 Blast hits to 6136 proteins in 701 species: Archae - 24; Bacteria - 2898; Metazoa - 3663; Fungi - 2202; Plants - 270; Viruses - 207; Other Eukaryotes - 2777 (source: NCBI BLink).
    NP_851007.1
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 11431 Blast hits to 6184 proteins in 707 species: Archae - 24; Bacteria - 2884; Metazoa - 3648; Fungi - 2195; Plants - 284; Viruses - 200; Other Eukaryotes - 2196 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7071193..7074697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180676.2 → NP_851007.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH09, A0A384KDS3, A0A5S9XE46, A8MQI3
      Conserved Domains (2) summary
      PHA03255
      Location:442 → 613
      PHA03255; BDLF3; Provisional
      cd15489
      Location:309 → 355
      PHD_SF; PHD finger superfamily

    2. NM_001338471.1 → NP_001326649.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPX7, A0A5S9XE46

    3. NM_001338472.1 → NP_001326650.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH09, A0A384KDS3, A0A5S9XE46, A8MQI3
      Conserved Domains (2) summary
      PHA03255
      Location:442 → 613
      PHA03255; BDLF3; Provisional
      cd15489
      Location:309 → 355
      PHD_SF; PHD finger superfamily

    4. NM_001338473.1 → NP_001326651.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPX7, A0A5S9XE46

    5. NM_112919.3 → NP_566656.3  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5PNS0
      Conserved Domains (2) summary
      PHA03255
      Location:181 → 352
      PHA03255; BDLF3; Provisional
      cl22851
      Location:48 → 94
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PNS0.1

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