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    Gm5082 predicted gene 5082 [ Mus musculus (house mouse) ]

    Gene ID: 328231, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm5082provided by MGI
    Official Full Name
    predicted gene 5082provided by MGI
    Primary source
    MGI:MGI:3644232
    See related
    Ensembl:ENSMUSG00000054258 AllianceGenome:MGI:3644232
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG328231; A030008J09
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm5082 in Genome Data Viewer
    Location:
    13 A4; 13 20.57 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (41802891..41810253)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (41648847..41653747)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32401 Neighboring gene predicted gene, 32184 Neighboring gene STARR-positive B cell enhancer ABC_E7229 Neighboring gene STARR-positive B cell enhancer ABC_E5388 Neighboring gene STARR-seq mESC enhancer starr_34304 Neighboring gene STARR-positive B cell enhancer ABC_E4066 Neighboring gene transmembrane protein 170B Neighboring gene STARR-positive B cell enhancer mm9_chr13:41733437-41733738 Neighboring gene VISTA enhancer mm192 Neighboring gene predicted gene, 40925 Neighboring gene STARR-seq mESC enhancer starr_34305 Neighboring gene STARR-seq mESC enhancer starr_34306 Neighboring gene androgen dependent TFPI regulating protein Neighboring gene STARR-positive B cell enhancer ABC_E7230 Neighboring gene STARR-seq mESC enhancer starr_34308

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188112.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC133159
      Related
      ENSMUST00000221920.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      41802891..41810253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001145878.1: Suppressed sequence

      Description
      NM_001145878.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    2. NM_177808.4: Suppressed sequence

      Description
      NM_177808.4: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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