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    LRFN5 leucine rich repeat and fibronectin type III domain containing 5 [ Gallus gallus (chicken) ]

    Gene ID: 423599, updated on 17-Aug-2024

    Summary

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    Symbol
    LRFN5provided by CGNC
    Full Name
    leucine rich repeat and fibronectin type III domain containing 5provided by CGNC
    Primary source
    CGNC:9494
    See related
    Ensembl:ENSGALG00010018398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See LRFN5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (59247827..59295099, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (59134527..59181791, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532538 Neighboring gene uncharacterized LOC107051820 Neighboring gene uncharacterized LOC107051819 Neighboring gene uncharacterized LOC121113290 Neighboring gene uncharacterized LOC121113276

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat and fibronectin type-III domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      59247827..59295099 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421485.7 → XP_421485.3  leucine-rich repeat and fibronectin type-III domain-containing protein 5

      UniProtKB/TrEMBL
      A0A8V0Z697
      Related
      ENSGALP00010026450.1, ENSGALT00010044439.1
      Conserved Domains (5) summary
      smart00410
      Location:296 → 374
      IG_like; Immunoglobulin like
      sd00033
      Location:53 → 76
      LRR_RI; leucine-rich repeat [structural motif]
      NF033189
      Location:55 → 212
      internalin_A; class 1 internalin InlA
      cd00096
      Location:304 → 308
      Ig; Ig strand B [structural motif]
      cl15307
      Location:240 → 272
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    RNA

    1. XR_005860205.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      59134527..59181791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040672830.2 → XP_040528764.1  leucine-rich repeat and fibronectin type-III domain-containing protein 5

      UniProtKB/TrEMBL
      A0A8V0Z697
      Conserved Domains (5) summary
      sd00033
      Location:53 → 76
      LRR_RI; leucine-rich repeat [structural motif]
      cd05764
      Location:287 → 374
      IgI_SALM5_like; Immunoglobulin domain of human Synaptic Adhesion-Like Molecule 5 (SALM5) and similar proteins; member of the I-set of IgSF domains
      cd21340
      Location:56 → 211
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:240 → 272
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
      cl21522
      Location:422 → 495
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RNA

    1. XR_005850517.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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