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    PRPF4B pre-mRNA processing factor 4B [ Gallus gallus (chicken) ]

    Gene ID: 420879, updated on 17-Aug-2024

    Summary

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    Symbol
    PRPF4Bprovided by CGNC
    Full Name
    pre-mRNA processing factor 4Bprovided by CGNC
    Primary source
    CGNC:9712
    See related
    Ensembl:ENSGALG00010011318
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PRPF4B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (65675730..65702346, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (65624736..65651092, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112531764 Neighboring gene uncharacterized LOC124417767 Neighboring gene uncharacterized LOC124417768 Neighboring gene enoyl-CoA delta isomerase 2 Neighboring gene uncharacterized LOC121109965 Neighboring gene uncharacterized LOC112531767 Neighboring gene uncharacterized LOC112531766 Neighboring gene uncharacterized LOC121113111 Neighboring gene uncharacterized LOC124417769 Neighboring gene PX domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-threonine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase PRP4 homolog
    Names
    PRP4 pre-mRNA processing factor 4 homolog B
    XP_015131496.2
    XP_040520924.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      65675730..65702346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015276010.3 → XP_015131496.2  serine/threonine-protein kinase PRP4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y457
      Related
      ENSGALP00010015401.1, ENSGALT00010027065.1
      Conserved Domains (3) summary
      PHA03307
      Location:368 → 495
      PHA03307; transcriptional regulator ICP4; Provisional
      cd14135
      Location:784 → 1101
      STKc_PRP4; Catalytic domain of the Serine/Threonine Kinase, Pre-mRNA-Processing factor 4
      TIGR01642
      Location:284 → 449
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

    RNA

    1. XR_005857825.1 RNA Sequence

    2. XR_003073755.2 RNA Sequence

    3. XR_003073754.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      65624736..65651092 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040664990.2 → XP_040520924.1  serine/threonine-protein kinase PRP4 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y457
      Conserved Domains (3) summary
      PHA03307
      Location:227 → 395
      PHA03307; transcriptional regulator ICP4; Provisional
      cd14135
      Location:684 → 1001
      STKc_PRP4; Catalytic domain of the Serine/Threonine Kinase, Pre-mRNA-Processing factor 4
      TIGR01642
      Location:171 → 277
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

    RNA

    1. XR_005847123.2 RNA Sequence

    2. XR_006933755.1 RNA Sequence

    3. XR_005847124.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001031000.1: Suppressed sequence

      Description
      NM_001031000.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials