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    ALMS1 ALMS1, centrosome and basal body associated protein [ Gallus gallus (chicken) ]

    Gene ID: 422949, updated on 3-Dec-2024

    Summary

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    Symbol
    ALMS1provided by CGNC
    Full Name
    ALMS1, centrosome and basal body associated proteinprovided by CGNC
    Primary source
    CGNC:51865
    See related
    Ensembl:ENSGALG00010018087
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ALMS1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (89188992..89241139, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (88993001..89044837, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121113227 Neighboring gene uncharacterized LOC112532399 Neighboring gene ADAM metallopeptidase domain 33 Neighboring gene early growth response 4 Neighboring gene F-box protein 41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of centriole replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Alstrom syndrome protein 1
    Names
    Alstrom syndrome 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      89188992..89241139 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040700107.2 → XP_040556041.1  Alstrom syndrome protein 1 isoform X13

      UniProtKB/TrEMBL
      A0A8V0YY89

    2. XM_040700106.2 → XP_040556040.1  Alstrom syndrome protein 1 isoform X12

      UniProtKB/TrEMBL
      A0A8V0YY89

    3. XM_025149803.3 → XP_025005571.2  Alstrom syndrome protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A8V0YY89

    4. XM_040700105.2 → XP_040556039.1  Alstrom syndrome protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V0YY89

    5. XM_015286054.4 → XP_015141540.2  Alstrom syndrome protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8V0YY89

    6. XM_040700103.2 → XP_040556037.1  Alstrom syndrome protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8V0YY89

    7. XM_040700101.2 → XP_040556035.1  Alstrom syndrome protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0YY89

    8. XM_015286051.4 → XP_015141537.2  Alstrom syndrome protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YY89

    9. XM_040700102.2 → XP_040556036.1  Alstrom syndrome protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0YY89

    10. XM_015286052.4 → XP_015141538.2  Alstrom syndrome protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YY89

    11. XM_015286053.4 → XP_015141539.2  Alstrom syndrome protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0YY89

    12. XM_420887.8 → XP_420887.6  Alstrom syndrome protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YY89, A0A8V0ZBZ5
      Related
      ENSGALP00010026017.1, ENSGALT00010043729.1

    13. XM_046941166.1 → XP_046797122.1  Alstrom syndrome protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V0YY89

    14. XM_015286056.4 → XP_015141542.2  Alstrom syndrome protein 1 isoform X16

    15. XM_015286055.4 → XP_015141541.2  Alstrom syndrome protein 1 isoform X16

    16. XM_040700109.2 → XP_040556043.1  Alstrom syndrome protein 1 isoform X15

      UniProtKB/TrEMBL
      A0A8V0YY89

    17. XM_040700108.2 → XP_040556042.1  Alstrom syndrome protein 1 isoform X14

      UniProtKB/TrEMBL
      A0A8V0YY89
      Related
      ENSGALP00010026016.1, ENSGALT00010043727.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      88993001..89044837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670058.2 → XP_040525992.1  Alstrom syndrome protein 1 isoform X13

      UniProtKB/TrEMBL
      A0A8V0YY89

    2. XM_040670057.2 → XP_040525991.1  Alstrom syndrome protein 1 isoform X12

      UniProtKB/TrEMBL
      A0A8V0YY89

    3. XM_040670055.2 → XP_040525989.1  Alstrom syndrome protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A8V0YY89

    4. XM_040670056.2 → XP_040525990.1  Alstrom syndrome protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V0YY89

    5. XM_040670054.2 → XP_040525988.1  Alstrom syndrome protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8V0YY89
      Conserved Domains (1) summary
      pfam15309
      Location:2516 → 2647
      ALMS_motif; ALMS motif

    6. XM_040670053.2 → XP_040525987.1  Alstrom syndrome protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8V0YY89

    7. XM_040670051.2 → XP_040525985.1  Alstrom syndrome protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0YY89

    8. XM_040670049.2 → XP_040525983.1  Alstrom syndrome protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YY89
      Conserved Domains (1) summary
      pfam15309
      Location:2750 → 2881
      ALMS_motif; ALMS motif

    9. XM_040670052.2 → XP_040525986.1  Alstrom syndrome protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0YY89

    10. XM_040670048.2 → XP_040525982.1  Alstrom syndrome protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YY89
      Conserved Domains (1) summary
      pfam15309
      Location:2750 → 2881
      ALMS_motif; ALMS motif

    11. XM_040670050.2 → XP_040525984.1  Alstrom syndrome protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0YY89
      Conserved Domains (1) summary
      pfam15309
      Location:2726 → 2857
      ALMS_motif; ALMS motif

    12. XM_040670047.2 → XP_040525981.1  Alstrom syndrome protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YY89

    13. XM_046916817.1 → XP_046772773.1  Alstrom syndrome protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V0YY89

    14. XM_040670062.2 → XP_040525996.1  Alstrom syndrome protein 1 isoform X16

      Conserved Domains (1) summary
      pfam15309
      Location:665 → 796
      ALMS_motif; ALMS motif

    15. XM_040670061.2 → XP_040525995.1  Alstrom syndrome protein 1 isoform X16

      Conserved Domains (1) summary
      pfam15309
      Location:665 → 796
      ALMS_motif; ALMS motif

    16. XM_040670060.2 → XP_040525994.1  Alstrom syndrome protein 1 isoform X15

      UniProtKB/TrEMBL
      A0A8V0YY89

    17. XM_040670059.2 → XP_040525993.1  Alstrom syndrome protein 1 isoform X14

      UniProtKB/TrEMBL
      A0A8V0YY89
    Nucleotide Protein
    Heading Accession and Version

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