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    TRAFD1 TRAF-type zinc finger domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 416884, updated on 3-Dec-2024

    Summary

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    Symbol
    TRAFD1provided by CGNC
    Full Name
    TRAF-type zinc finger domain containing 1provided by CGNC
    Primary source
    CGNC:3566
    See related
    Ensembl:ENSGALG00010025971
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TRAFD1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (6309041..6318460)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (6319778..6329196)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 116 Neighboring gene endoplasmic reticulum protein 29 Neighboring gene N(alpha)-acetyltransferase 25, NatB auxiliary subunit Neighboring gene HECT domain containing E3 ubiquitin protein ligase 4 Neighboring gene ribosomal protein L6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    TRAF-type zinc finger domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006191.4 → NP_001006191.2  TRAF-type zinc finger domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000260
      UniProtKB/TrEMBL
      A0A1D5NZ72, A0A8V1ACB3
      Related
      ENSGALP00010039100.1, ENSGALT00010063340.1
      Conserved Domains (1) summary
      PLN03086
      Location:6 → 130
      PLN03086; PRLI-interacting factor K; Provisional

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6309041..6318460
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015275301.4 → XP_015130787.2  TRAF-type zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ACB3
      Conserved Domains (1) summary
      cl27293
      Location:6 → 130
      UFD1; Ubiquitin fusion degradation protein UFD1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6319778..6329196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928149.1 → XP_046784105.1  TRAF-type zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ACB3
    Nucleotide Protein Strain
    Heading Accession and Version

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