PLXNA1 plexin A1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: PLXNA1provided by CGNC
Full Name: plexin A1provided by CGNC
Primary source: CGNC:4575
See related: Ensembl:ENSGALG00010022196
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: plexin-A1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 33

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	12	NC_052543.1 (10072334..10170333)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	12	NC_052584.1 (10100625..10198572)

Chromosome 12 - NC_052543.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

MARC_9713-9714:996688545:1 (e-PCR)
- UniSTS:269978

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables semaphorin receptor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of cell adhesion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of axonogenesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of GTPase activity	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of cell migration	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of cell shape	IEA Inferred from Electronic Annotation more info	PubMed
involved_in semaphorin-plexin signaling pathway involved in axon guidance	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of semaphorin receptor complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: plexin-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

10072334..10170333

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_004944597.5 → XP_004944654.1 plexin-A1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZNY6

Conserved Domains (9) summary

cd11271
Location:43 → 516

Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1

cd01179
Location:963 → 1048

IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01180
Location:866 → 962

IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01181
Location:1050 → 1150

IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

pfam01437
Location:517 → 559

PSI; Plexin repeat

pfam01833
Location:1152 → 1236

TIG; IPT/TIG domain

pfam08337
Location:1320 → 1894

Plexin_cytopl; Plexin cytoplasmic RasGAP domain

pfam17960
Location:572 → 662

TIG_plexin; TIG domain

pfam18020
Location:716 → 810

TIG_2; TIG domain found in plexin
XM_414370.8 → XP_414370.4 plexin-A1 isoform X2

UniProtKB/TrEMBL

F1N804

Conserved Domains (9) summary

cd11271
Location:43 → 516

Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1

cd01179
Location:963 → 1048

IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01180
Location:866 → 962

IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01181
Location:1050 → 1150

IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

pfam01437
Location:517 → 559

PSI; Plexin repeat

pfam01833
Location:1152 → 1236

TIG; IPT/TIG domain

pfam08337
Location:1320 → 1868

Plexin_cytopl; Plexin cytoplasmic RasGAP domain

pfam17960
Location:572 → 662

TIG_plexin; TIG domain

pfam18020
Location:716 → 810

TIG_2; TIG domain found in plexin
XM_015293366.4 → XP_015148852.1 plexin-A1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZNY6

Conserved Domains (9) summary

cd11271
Location:43 → 516

Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1

cd01179
Location:963 → 1048

IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01180
Location:866 → 962

IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01181
Location:1050 → 1150

IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

pfam01437
Location:517 → 559

PSI; Plexin repeat

pfam01833
Location:1152 → 1236

TIG; IPT/TIG domain

pfam08337
Location:1320 → 1894

Plexin_cytopl; Plexin cytoplasmic RasGAP domain

pfam17960
Location:572 → 662

TIG_plexin; TIG domain

pfam18020
Location:716 → 810

TIG_2; TIG domain found in plexin
XM_046900006.1 → XP_046755962.1 plexin-A1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZNY6

Related

ENSGALP00010032527.1, ENSGALT00010053995.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

10100625..10198572

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040682497.2 → XP_040538431.1 plexin-A1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZNY6

Conserved Domains (9) summary

cd11271
Location:43 → 516

Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1

cd01179
Location:963 → 1048

IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01180
Location:866 → 962

IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01181
Location:1050 → 1150

IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

pfam01437
Location:517 → 559

PSI; Plexin repeat

pfam01833
Location:1152 → 1236

TIG; IPT/TIG domain

pfam08337
Location:1320 → 1894

Plexin_cytopl; Plexin cytoplasmic RasGAP domain

pfam17960
Location:572 → 662

TIG_plexin; TIG domain

pfam18020
Location:716 → 810

TIG_2; TIG domain found in plexin
XM_040682499.2 → XP_040538433.1 plexin-A1 isoform X2

Conserved Domains (9) summary

cd11271
Location:43 → 516

Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1

cd01179
Location:963 → 1048

IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01180
Location:866 → 962

IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01181
Location:1050 → 1150

IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

pfam01437
Location:517 → 559

PSI; Plexin repeat

pfam01833
Location:1152 → 1236

TIG; IPT/TIG domain

pfam08337
Location:1320 → 1868

Plexin_cytopl; Plexin cytoplasmic RasGAP domain

pfam17960
Location:572 → 662

TIG_plexin; TIG domain

pfam18020
Location:716 → 810

TIG_2; TIG domain found in plexin
XM_040682498.2 → XP_040538432.1 plexin-A1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZNY6

Conserved Domains (9) summary

cd11271
Location:43 → 516

Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1

cd01179
Location:963 → 1048

IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01180
Location:866 → 962

IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

cd01181
Location:1050 → 1150

IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...

pfam01437
Location:517 → 559

PSI; Plexin repeat

pfam01833
Location:1152 → 1236

TIG; IPT/TIG domain

pfam08337
Location:1320 → 1894

Plexin_cytopl; Plexin cytoplasmic RasGAP domain

pfam17960
Location:572 → 662

TIG_plexin; TIG domain

pfam18020
Location:716 → 810

TIG_2; TIG domain found in plexin
XM_046926698.1 → XP_046782654.1 plexin-A1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZNY6