U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm5820 predicted gene 5820 [ Mus musculus (house mouse) ]

    Gene ID: 545253, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm5820provided by MGI
    Official Full Name
    predicted gene 5820provided by MGI
    Primary source
    MGI:MGI:3646292
    See related
    Ensembl:ENSMUSG00000117994 AllianceGenome:MGI:3646292
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG545253
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm5820 in Genome Data Viewer
    Location:
    18 B3; 18 20.87 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (39025509..39114676)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (38892456..38981623)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 26 Neighboring gene predicted gene, 19774 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44384 Neighboring gene STARR-seq mESC enhancer starr_44387 Neighboring gene fibroblast growth factor 1 Neighboring gene STARR-seq mESC enhancer starr_44390 Neighboring gene STARR-positive B cell enhancer ABC_E10987 Neighboring gene STARR-positive B cell enhancer ABC_E4246 Neighboring gene predicted gene, 52330 Neighboring gene STARR-seq mESC enhancer starr_44392 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:39242828-39243011 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:39243680-39243789 Neighboring gene STARR-seq mESC enhancer starr_44393 Neighboring gene STARR-seq mESC enhancer starr_44394 Neighboring gene STARR-seq mESC enhancer starr_44395 Neighboring gene STARR-seq mESC enhancer starr_44397 Neighboring gene STARR-seq mESC enhancer starr_44398 Neighboring gene STARR-seq mESC enhancer starr_44400 Neighboring gene predicted gene 15337

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC545253

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033789.2 → NP_001028961.1  uncharacterized protein LOC545253

      See identical proteins and their annotated locations for NP_001028961.1

      Status: VALIDATED

      Source sequence(s)
      AC110730, AK145364
      UniProtKB/TrEMBL
      Q3ULQ8
      Related
      ENSMUST00000115580.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      39025509..39114676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036161214.1 → XP_036017107.1  uncharacterized protein LOC545253 isoform X2

    2. XM_036161215.1 → XP_036017108.1  uncharacterized protein LOC545253 isoform X2

    3. XM_017317953.2 → XP_017173442.1  uncharacterized protein LOC545253 isoform X3

    4. XM_036161216.1 → XP_036017109.1  uncharacterized protein LOC545253 isoform X4

    5. XM_017317952.2 → XP_017173441.1  uncharacterized protein LOC545253 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.