Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Polynucleotide adenylyltransferase family protein
Primary source: TAIR:AT1G28090
Locus tag: AT1G28090
See related: Araport:AT1G28090
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F13K9.19; F13K9_19
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 14

Sequence:: Chromosome: 1; NC_003070.9 (9795718..9799116)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001084144.1

Supported by ESTs:

NM_001332799.1

Supported by ESTs:

NM_001332800.1

Supported by ESTs:

NM_102574.4

Supported by ESTs:

NM_202195.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Polynucleotide adenylyltransferase family protein

NP_001077613.1

Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9376 Blast hits to 9368 proteins in 2610 species: Archae - 2; Bacteria - 6608; Metazoa - 130; Fungi - 222; Plants - 128; Viruses - 8; Other Eukaryotes - 2278 (source: NCBI BLink).

NP_174130.2

Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9340 Blast hits to 9332 proteins in 2600 species: Archae - 2; Bacteria - 6572; Metazoa - 129; Fungi - 227; Plants - 128; Viruses - 8; Other Eukaryotes - 2274 (source: NCBI BLink).

NP_973924.1

Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

9795718..9799116

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_102574.4 → NP_174130.2 Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W431, F4HUW0

Conserved Domains (1) summary

COG0617
Location:91 → 398

PcnB; tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
NM_202195.3 → NP_973924.1 Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W4S3, B4F7Q8, Q9C7E4

Conserved Domains (1) summary

TIGR01942
Location:51 → 350

pcnB; poly(A) polymerase
NM_001332799.1 → NP_001322265.1 Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ATH4, Q9C7E4
NM_001332800.1 → NP_001322264.1 Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ATK0
NM_001084144.1 → NP_001077613.1 Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A8MQQ4, Q9C7E4

Conserved Domains (2) summary

cd05398
Location:41 → 175

NT_ClassII-CCAase; Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes

pfam12627
Location:206 → 269

PolyA_pol_RNAbd; Probable RNA and SrmB- binding site of polymerase A